Gene detail information of Glyur000918s00025549.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G23140.10RING/U-box superfamily protein with ARM repeat domain
NRXP_004500342.10PREDICTED: U-box domain-containing protein 4-like [Cicer arietinum]
COGYP_001957542.12.00E-11hypothetical protein Aasi_0393 [Candidatus Amoebophilus asiaticus 5a2]
Swissprottr|O22193|PUB4_ARATH0U-box domain-containing protein 4
trEMBLtr|A0A072UYD4|A0A072UYD4_MEDTR0ARM repeat RING/U-box protein {ECO:0000313|EMBL:KEH34421.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold009185798563570-


Gene family

Gene familysubfamily
Ubiquitin FamilyU_box


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0016567  protein ubiquitination


molecular_function

GO:0004842  ubiquitin-protein transferase activity

GO:0005488  binding

GO:0005515  protein binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000918s00025549.1PF04564.10U-box2363061.70E-20
Glyur000918s00025549.1PF00514.18Arm5866231.80E-10
Glyur000918s00025549.1PF00514.18Arm6256641.60E-05
Glyur000918s00025549.1PF00514.18Arm6687053.40E-06


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.486
SRR1783600control10.524
SRR1783602moderate drought stress23.296
SRR1811619moderate drought stress23.556

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain18.534
DRR006520Root Summer glycyrrhizin high producing strain18.281
DRR006521Root Winter glycyrrhizin high producing strain29.973
DRR006522Root Winter glycyrrhizin high producing strain28.941
DRR006523Root Summer glycyrrhizin low producing strain26.704
DRR006524Root Summer glycyrrhizin low producing strain26.479
DRR006525Leaf Summer glycyrrhizin high producing strain9.553
DRR006526Leaf Summer glycyrrhizin high producing strain9.497

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)20.538
SRR2868004Drought Stress(Tissue:root)31.874
SRR2967015Control (Tissue:root)39.411

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave14.866
SRR9715740Leave18.912
SRR9715741Leave22.144
SRR9715739Root7.526
SRR9715742Root19.749
SRR9715743Root16.349

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h20.166
SRR8749028MeJA induced 9h57.629
SRR8749029MeJA induced 9h23.955
SRR8749030Uninduced26.191
SRR8749031Uninduced20.706
SRR8749032Uninduced21.370

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root19.012
SRR8400027Control-Root17.388

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved