Gene detail information of Glyur000918s00025550.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G02660.10Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial
NRKEH34424.10tyrosyl-tRNA synthetase [Medicago truncatula]
COGYP_004652121.11.00E-168tyrosyl-tRNA synthetase [Parachlamydia acanthamoebae UV-7]
trEMBLtr|A0A072UXA5|A0A072UXA5_MEDTR0Tyrosine--tRNA ligase {ECO:0000256|RuleBase:RU361234}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold009186628367782+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01866YARS, tyrS EC:6.1.1.1 Aminoacyl-tRNA biosynthesis map00970


Gene Ontology

biological_process

GO:0006418  tRNA aminoacylation for protein translation

GO:0006437  tyrosyl-tRNA aminoacylation


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0000166  nucleotide binding

GO:0003723  RNA binding

GO:0004812  aminoacyl-tRNA ligase activity

GO:0004831  tyrosine-tRNA ligase activity

GO:0005524  ATP binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000918s00025550.1PF00579.20tRNA-synt_1b903986.30E-74
Glyur000918s00025550.1PF01479.20S44374794.10E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.484
SRR1783600control8.334
SRR1783602moderate drought stress4.974
SRR1811619moderate drought stress4.804

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain8.505
DRR006520Root Summer glycyrrhizin high producing strain8.875
DRR006521Root Winter glycyrrhizin high producing strain5.323
DRR006522Root Winter glycyrrhizin high producing strain4.899
DRR006523Root Summer glycyrrhizin low producing strain7.841
DRR006524Root Summer glycyrrhizin low producing strain7.526
DRR006525Leaf Summer glycyrrhizin high producing strain19.396
DRR006526Leaf Summer glycyrrhizin high producing strain19.091

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)10.744
SRR2868004Drought Stress(Tissue:root)11.331
SRR2967015Control (Tissue:root)9.044

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave18.833
SRR9715740Leave24.148
SRR9715741Leave15.114
SRR9715739Root12.306
SRR9715742Root10.806
SRR9715743Root10.828

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h6.604
SRR8749028MeJA induced 9h11.295
SRR8749029MeJA induced 9h10.130
SRR8749030Uninduced8.807
SRR8749031Uninduced3.245
SRR8749032Uninduced5.925

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root12.786
SRR8400027Control-Root15.004

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved