Gene detail information of Glyur000918s00025553.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G30350.2 | 1.00E-79 | Excinuclease ABC, C subunit, N-terminal |
| NR | XP_003537333.1 | 0 | PREDICTED: uncharacterized protein LOC100801307 [Glycine max] |
| trEMBL | tr|I1LLV5|I1LLV5_SOYBN | 0 | Structure-specific endonuclease subunit SLX1 homolog {ECO:0000256|HAMAP-Rule:MF_03100} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00918 | 85738 | 88159 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K15078 | SLX1 | EC:3.6.1.- | Fanconi anemia pathway | map03460 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000918s00025553.1 | PF01541.19 | GIY-YIG | 52 | 109 | 8.50E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.195 |
| SRR1783600 | control | 4.295 |
| SRR1783602 | moderate drought stress | 4.815 |
| SRR1811619 | moderate drought stress | 4.958 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.143 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.345 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.769 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.521 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.949 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.345 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.205 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.271 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 11.209 |
| SRR2868004 | Drought Stress(Tissue:root) | 10.417 |
| SRR2967015 | Control (Tissue:root) | 12.029 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 7.887 |
| SRR9715740 | Leave | 7.184 |
| SRR9715741 | Leave | 5.998 |
| SRR9715739 | Root | 0.620 |
| SRR9715742 | Root | 3.007 |
| SRR9715743 | Root | 2.464 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.792 |
| SRR8749028 | MeJA induced 9h | 12.676 |
| SRR8749029 | MeJA induced 9h | 5.987 |
| SRR8749030 | Uninduced | 14.305 |
| SRR8749031 | Uninduced | 5.997 |
| SRR8749032 | Uninduced | 5.847 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.115 |
| SRR8400027 | Control-Root | 7.121 |