Gene detail information of Glyur000923s00029697.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G00090.1 | 1.00E-174 | Transducin/WD40 repeat-like superfamily protein |
| NR | XP_003552339.1 | 0 | PREDICTED: uncharacterized LOC100306508 [Glycine max] |
| COG | YP_001864889.1 | 5.00E-23 | hypothetical protein Npun_F1222 [Nostoc punctiforme PCC 73102] |
| Swissprot | tr|Q8H0T9|KTNB1_ARATH | 6.00E-09 | Katanin p80 WD40 repeat-containing subunit B1 homolog {ECO:0000255|HAMAP-Rule:MF_03022} |
| trEMBL | tr|I1N3E7|I1N3E7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G45270.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00923 | 40515 | 47065 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000923s00029697.1 | PF00400.27 | WD40 | 79 | 113 | 2.40E-08 |
| Glyur000923s00029697.1 | PF00400.27 | WD40 | 286 | 320 | 5.20E-10 |
| Glyur000923s00029697.1 | PF00400.27 | WD40 | 387 | 425 | 1.70E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 24.420 |
| SRR1783600 | control | 24.639 |
| SRR1783602 | moderate drought stress | 28.616 |
| SRR1811619 | moderate drought stress | 28.239 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 32.052 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 31.599 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 58.943 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 56.862 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 24.512 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 24.214 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 21.859 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 21.749 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 30.670 |
| SRR2868004 | Drought Stress(Tissue:root) | 19.710 |
| SRR2967015 | Control (Tissue:root) | 22.555 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 19.660 |
| SRR9715740 | Leave | 21.892 |
| SRR9715741 | Leave | 19.038 |
| SRR9715739 | Root | 6.769 |
| SRR9715742 | Root | 19.948 |
| SRR9715743 | Root | 19.706 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 18.814 |
| SRR8749028 | MeJA induced 9h | 11.113 |
| SRR8749029 | MeJA induced 9h | 10.132 |
| SRR8749030 | Uninduced | 6.014 |
| SRR8749031 | Uninduced | 3.360 |
| SRR8749032 | Uninduced | 3.862 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 27.481 |
| SRR8400027 | Control-Root | 22.861 |