Gene detail information of Glyur000924s00030906.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G08840.20DNA replication helicase, putative
NRKEH22228.10DNA replication ATP-dependent helicase Dna2 [Medicago truncatula]
COGYP_008053374.12.00E-42DNA/RNA helicase, superfamily i [Salinarchaeum sp. Harcht-Bsk1]
trEMBLtr|A0A072TZB7|A0A072TZB7_MEDTR0DNA replication ATP-dependent helicase Dna2 {ECO:0000313|EMBL:KEH22228.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold009242886966683-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10742DNA2 EC:3.6.4.12 DNA replication map03030


Gene Ontology

biological_process

GO:0033567  DNA replication, Okazaki fragment processing


molecular_function

GO:0017108  5'-flap endonuclease activity

GO:0043142  single-stranded DNA-dependent ATPase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000924s00030906.1PF08696.6Dna23625621.60E-58
Glyur000924s00030906.1PF13086.1AAA_119099849.30E-14
Glyur000924s00030906.1PF13086.1AAA_1199310601.20E-19
Glyur000924s00030906.1PF13087.1AAA_12106911742.50E-08
Glyur000924s00030906.1PF13087.1AAA_12117512248.60E-13


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.635
SRR1783600control1.672
SRR1783602moderate drought stress1.016
SRR1811619moderate drought stress0.983

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.593
DRR006520Root Summer glycyrrhizin high producing strain0.594
DRR006521Root Winter glycyrrhizin high producing strain0.397
DRR006522Root Winter glycyrrhizin high producing strain0.426
DRR006523Root Summer glycyrrhizin low producing strain0.201
DRR006524Root Summer glycyrrhizin low producing strain0.180
DRR006525Leaf Summer glycyrrhizin high producing strain0.315
DRR006526Leaf Summer glycyrrhizin high producing strain0.299

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)2.511
SRR2868004Drought Stress(Tissue:root)1.835
SRR2967015Control (Tissue:root)1.805

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.804
SRR9715740Leave0.529
SRR9715741Leave0.824
SRR9715739Root0.123
SRR9715742Root0.695
SRR9715743Root0.644

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h2.537
SRR8749028MeJA induced 9h3.037
SRR8749029MeJA induced 9h1.936
SRR8749030Uninduced0.274
SRR8749031Uninduced0.324
SRR8749032Uninduced0.264

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root2.484
SRR8400027Control-Root2.873

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved