Gene detail information of Glyur000925s00020291.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G25265.1 | 2.00E-130 | |
| NR | BAP90380.1 | 5.33E-176 | Hyp O-arabinosyltransferase homolog [Lotus japonicus] |
| trEMBL | tr|I3T0N3|I3T0N3_LOTJA | 4.00E-175 | Uncharacterized protein {ECO:0000313|EMBL:AFK46075.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00925 | 5164 | 17197 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K20782 | HPAT | EC:2.4.2.58 | Other types of O-glycan biosynthesis | map00514 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 49.900 |
| SRR1783600 | control | 50.547 |
| SRR1783602 | moderate drought stress | 66.876 |
| SRR1811619 | moderate drought stress | 65.300 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 34.959 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 36.487 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 34.712 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 33.934 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 31.968 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 33.516 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.993 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.258 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 69.778 |
| SRR2868004 | Drought Stress(Tissue:root) | 61.833 |
| SRR2967015 | Control (Tissue:root) | 66.046 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 24.991 |
| SRR9715740 | Leave | 21.825 |
| SRR9715741 | Leave | 31.789 |
| SRR9715739 | Root | 40.136 |
| SRR9715742 | Root | 45.912 |
| SRR9715743 | Root | 46.546 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 28.044 |
| SRR8749028 | MeJA induced 9h | 28.344 |
| SRR8749029 | MeJA induced 9h | 24.901 |
| SRR8749030 | Uninduced | 15.242 |
| SRR8749031 | Uninduced | 7.763 |
| SRR8749032 | Uninduced | 13.481 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 68.965 |
| SRR8400027 | Control-Root | 66.578 |