Gene detail information of Glyur000925s00020293.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G31650.1 | 3.00E-41 | homologue of trithorax |
| NR | KHN22522.1 | 0 | Histone-lysine N-methyltransferase ATX2 [Glycine soja] |
| COG | YP_003280830.1 | 6.00E-20 | nuclear protein SET [Comamonas testosteroni CNB-2] |
| Swissprot | tr|Q9C5X4|ATX1_ARATH | 1.00E-41 | Histone-lysine N-methyltransferase ATX1 |
| trEMBL | tr|K7MN78|K7MN78_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G32895.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00925 | 14991 | 29349 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SET |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000925s00020293.1 | PF13831.1 | PHD_2 | 1516 | 1550 | 6.50E-10 |
| Glyur000925s00020293.1 | PF13832.1 | zf-HC5HC2H_2 | 1670 | 1749 | 3.20E-16 |
| Glyur000925s00020293.1 | PF00856.23 | SET | 1871 | 1978 | 3.10E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.530 |
| SRR1783600 | control | 10.659 |
| SRR1783602 | moderate drought stress | 12.945 |
| SRR1811619 | moderate drought stress | 12.790 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.064 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.342 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.696 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.875 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.911 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.822 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.528 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.349 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 14.986 |
| SRR2868004 | Drought Stress(Tissue:root) | 15.871 |
| SRR2967015 | Control (Tissue:root) | 16.392 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.566 |
| SRR9715740 | Leave | 6.978 |
| SRR9715741 | Leave | 4.648 |
| SRR9715739 | Root | 1.350 |
| SRR9715742 | Root | 9.512 |
| SRR9715743 | Root | 8.307 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.815 |
| SRR8749028 | MeJA induced 9h | 8.409 |
| SRR8749029 | MeJA induced 9h | 5.042 |
| SRR8749030 | Uninduced | 0.892 |
| SRR8749031 | Uninduced | 0.595 |
| SRR8749032 | Uninduced | 1.115 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 18.579 |
| SRR8400027 | Control-Root | 19.761 |