Gene detail information of Glyur000926s00019318.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G18905.1 | 6.00E-131 | Transducin/WD40 repeat-like superfamily protein |
| NR | KHN43964.1 | 0 | Putative WD repeat-containing protein C17D11.16 [Glycine soja] |
| COG | YP_003887875.1 | 1.00E-20 | WD40 repeat-containing protein [Cyanothece sp. PCC 7822] |
| Swissprot | tr|P43254|COP1_ARATH | 2.00E-12 | E3 ubiquitin-protein ligase COP1 |
| trEMBL | tr|I1JJS2|I1JJS2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G47740.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00926 | 19448 | 23387 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000926s00019318.1 | PF00400.27 | WD40 | 220 | 253 | 1.60E-08 |
| Glyur000926s00019318.1 | PF00400.27 | WD40 | 257 | 292 | 3.70E-07 |
| Glyur000926s00019318.1 | PF00400.27 | WD40 | 356 | 390 | 1.00E-08 |
| Glyur000926s00019318.1 | PF00400.27 | WD40 | 399 | 435 | 0.1 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.027 |
| SRR1783600 | control | 0.002 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.068 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.103 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.382 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.614 |
| SRR2967015 | Control (Tissue:root) | 0.287 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.017 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.085 |
| SRR8749028 | MeJA induced 9h | 0.089 |
| SRR8749029 | MeJA induced 9h | 0.089 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.037 |
| SRR8400027 | Control-Root | 0.088 |