Gene detail information of Glyur000926s00019321.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G14170.10aldehyde dehydrogenase 6B2
NRXP_003593285.10Methylmalonate-semialdehyde dehydrogenase [Medicago truncatula]
COGYP_557464.10acylating methylmalonate-semialdehyde dehydrogenase [Burkholderia xenovorans LB400]
Swissprottr|Q0WM29|MMSA_ARATH0Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial (Precursor)
trEMBLtr|G7IS75|G7IS75_MEDTR0Methylmalonate-semialdehyde dehydrogenase {ECO:0000313|EMBL:AES63536.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold009263431740085+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00140mmsA, iolA, ALDH6A1 EC:1.2.1.18 1.2.1.27 Carbon metabolism map01200
Propanoate metabolismmap00640
Inositol phosphate metabolismmap00562
Valine, leucine and isoleucine degradationmap00280
beta-Alanine metabolismmap00410


Gene Ontology

biological_process

GO:0008152  metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0004491  methylmalonate-semialdehyde dehydrogenase (acylating) activity

GO:0016491  oxidoreductase activity

GO:0016620  oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000926s00019321.2PF00171.17Aldedh23833.70E-12
Glyur000926s00019321.2PF00171.17Aldedh1313992.80E-73


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control33.157
SRR1783600control33.123
SRR1783602moderate drought stress34.754
SRR1811619moderate drought stress34.344

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain88.117
DRR006520Root Summer glycyrrhizin high producing strain85.803
DRR006521Root Winter glycyrrhizin high producing strain1.964
DRR006522Root Winter glycyrrhizin high producing strain2.116
DRR006523Root Summer glycyrrhizin low producing strain27.393
DRR006524Root Summer glycyrrhizin low producing strain27.697
DRR006525Leaf Summer glycyrrhizin high producing strain1.994
DRR006526Leaf Summer glycyrrhizin high producing strain2.050

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)41.551
SRR2868004Drought Stress(Tissue:root)33.192
SRR2967015Control (Tissue:root)25.094

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave2.399
SRR9715740Leave1.943
SRR9715741Leave1.163
SRR9715739Root21.735
SRR9715742Root33.739
SRR9715743Root29.347

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h10.322
SRR8749028MeJA induced 9h8.002
SRR8749029MeJA induced 9h8.322
SRR8749030Uninduced3.261
SRR8749031Uninduced1.553
SRR8749032Uninduced1.888

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root75.916
SRR8400027Control-Root60.356

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved