Gene detail information of Glyur000926s00019331.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G51600.23.00E-43ZIM-LIKE 2
NRXP_006583774.11.75E-159PREDICTED: GATA transcription factor 28-like [Glycine max]
Swissprottr|Q8H1G0|GAT28_ARATH2.00E-62GATA transcription factor 28
trEMBLtr|I1KL59|I1KL59_SOYBN7.00E-160Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G30140.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold009267908883806-


Gene family

Gene familysubfamily
Transcription Factors FamilyC2C2-GATA


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


molecular_function

GO:0003700  transcription factor activity, sequence-specific DNA binding

GO:0005515  protein binding

GO:0008270  zinc ion binding

GO:0043565  sequence-specific DNA binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000926s00019331.1PF06200.9tify38692.20E-09
Glyur000926s00019331.1PF06203.9CCT1061487.30E-16
Glyur000926s00019331.1PF00320.22GATA1742107.20E-13


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.674
SRR1783600control0.708
SRR1783602moderate drought stress1.734
SRR1811619moderate drought stress1.666

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain4.691
DRR006520Root Summer glycyrrhizin high producing strain4.669
DRR006521Root Winter glycyrrhizin high producing strain1.417
DRR006522Root Winter glycyrrhizin high producing strain1.127
DRR006523Root Summer glycyrrhizin low producing strain5.757
DRR006524Root Summer glycyrrhizin low producing strain6.073
DRR006525Leaf Summer glycyrrhizin high producing strain3.407
DRR006526Leaf Summer glycyrrhizin high producing strain2.998

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)6.717
SRR2868004Drought Stress(Tissue:root)5.473
SRR2967015Control (Tissue:root)7.521

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave4.510
SRR9715740Leave3.706
SRR9715741Leave2.926
SRR9715739Root0.657
SRR9715742Root2.017
SRR9715743Root1.547

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h8.830
SRR8749028MeJA induced 9h4.995
SRR8749029MeJA induced 9h2.616
SRR8749030Uninduced1.290
SRR8749031Uninduced0.350
SRR8749032Uninduced0.917

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root6.015
SRR8400027Control-Root7.609

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved