Gene detail information of Glyur000927s00024250.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G24015.1 | 1.00E-29 | RING/U-box superfamily protein |
| NR | XP_006593840.1 | 2.09E-97 | PREDICTED: RING-H2 zinc finger protein RHA4a-like isoform X1 [Glycine max] |
| Swissprot | tr|Q84TF5|RHA4A_ARATH | 1.00E-49 | RING-H2 zinc finger protein RHA4a |
| trEMBL | tr|K7LY93|K7LY93_SOYBN | 8.00E-98 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G10581.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00927 | 67118 | 69765 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000927s00024250.1 | PF13639.1 | zf-RING_2 | 114 | 156 | 9.60E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.619 |
| SRR1783600 | control | 7.589 |
| SRR1783602 | moderate drought stress | 9.013 |
| SRR1811619 | moderate drought stress | 8.860 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.745 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.444 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 52.666 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 50.974 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 18.183 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 18.630 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.977 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.035 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.604 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.441 |
| SRR2967015 | Control (Tissue:root) | 0.994 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.508 |
| SRR9715740 | Leave | 3.987 |
| SRR9715741 | Leave | 3.037 |
| SRR9715739 | Root | 0.639 |
| SRR9715742 | Root | 3.812 |
| SRR9715743 | Root | 1.889 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.054 |
| SRR8749028 | MeJA induced 9h | 0.052 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.258 |
| SRR8749031 | Uninduced | 0.091 |
| SRR8749032 | Uninduced | 0.044 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.881 |
| SRR8400027 | Control-Root | 1.554 |