Gene detail information of Glyur000933s00028082.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G21790.10ribonucleotide reductase 1
NRKHN34035.10Ribonucleoside-diphosphate reductase large subunit [Glycine soja]
COGYP_003121671.10ribonucleoside-diphosphate reductase subunit alpha [Chitinophaga pinensis DSM 2588]
Swissprottr|Q9SJ20|RIR1_ARATH0Ribonucleoside-diphosphate reductase large subunit {ECO:0000303|PubMed:10542051}
trEMBLtr|I1JY66|I1JY66_SOYBN0Ribonucleoside-diphosphate reductase {ECO:0000256|RuleBase:RU003410}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0093397944103277-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10807RRM1 EC:1.17.4.1 Purine metabolism map00230
Pyrimidine metabolismmap00240
Glutathione metabolismmap00480


Gene Ontology

biological_process

GO:0006260  DNA replication

GO:0055114  oxidation-reduction process


molecular_function

GO:0004748  ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor

GO:0005524  ATP binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000933s00028082.1PF03477.11ATP-cone1894.90E-14
Glyur000933s00028082.1PF00317.16Ribonuc_red_lgN1422124.60E-24
Glyur000933s00028082.1PF02867.10Ribonuc_red_lgC2157587.10E-217


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.009
SRR1783600control3.037
SRR1783602moderate drought stress1.775
SRR1811619moderate drought stress1.770

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.093
DRR006520Root Summer glycyrrhizin high producing strain1.128
DRR006521Root Winter glycyrrhizin high producing strain1.138
DRR006522Root Winter glycyrrhizin high producing strain1.112
DRR006523Root Summer glycyrrhizin low producing strain2.347
DRR006524Root Summer glycyrrhizin low producing strain2.333
DRR006525Leaf Summer glycyrrhizin high producing strain0.188
DRR006526Leaf Summer glycyrrhizin high producing strain0.187

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)3.742
SRR2868004Drought Stress(Tissue:root)2.882
SRR2967015Control (Tissue:root)3.705

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.921
SRR9715740Leave1.065
SRR9715741Leave1.868
SRR9715739Root0.931
SRR9715742Root2.090
SRR9715743Root1.800

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h15.378
SRR8749028MeJA induced 9h15.097
SRR8749029MeJA induced 9h8.941
SRR8749030Uninduced3.210
SRR8749031Uninduced3.406
SRR8749032Uninduced1.218

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root9.110
SRR8400027Control-Root7.620

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved