Gene detail

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Gene detail information of Glyur000934s00021597.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G29000.2	9.00E-49	Homeodomain-like superfamily protein
NR	XP_004494732.1	1.75E-157	PREDICTED: protein PHR1-LIKE 1-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q8GUN5\|PHL1_ARATH	7.00E-63	Protein PHR1-LIKE 1
trEMBL	tr\|K7KGY4\|K7KGY4_SOYBN	3.00E-151	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G41040.3}

Sequence

Transcript Sequence

>Glyur000934s00021597.1
ATCATCATAAGAAAAATTATCAAAAACAAAAGTCTGTTTTTTTTATGGGAGGGATGGAGTTTGTGTTCCGAGATTGTTTGTTTTTTTTTAAACACGACAAACCCAAAAACGCGTGCACTACAACTTTTTTTTCTCCTCCTATTTCTCTCTTCTCTTACATGACCCTCCTTTTTTTTAGTTGGATTCCCAGCTTTTTAGATTCCGTTACCGGTTTTTCCCAATTCCAAACCAATCATCAGTTTATCGTTAAAGCCTCAAGAGCCATGTCTTCATCTTTACCTGTTCTTCCTACTCCCATGGAAAACAAGTATTTTTTTTTCCCAGATTCTTTTCAGCATTTGTCTGTCAGGGATCCTTTTTTTTATCATGCCTCACCGCAAGCTACATCATCAAATCCGATTTTTTTTGTTGGACACGAGTTTTCATCCGCTGCTGAATGTCCCTTTTTTTTCCCTTTTACCTCAGTTTCACAGCATGATAAGCAATATTTTTTTTCTCCCTTTGTTTCTCAGACATTAGGTGGCAACGCGTTTTTTTTTTTAAATTCAACAACATTCACTTCTCACCCTCAAGAAAATGATGATATTTCCTGGGGACCAGATCCATTTCAGGACATTCTTTTTTTTTCTGAAAATGTTTCTGTCCGGAATGATCAGGTGGAGATTTTTTTTTGTTACATGAATGATGACAATGTCAAAAAAACTGATTTTTTTTTGTGGGTTGATCAGTTAATGTCAATTGATGATTCTCTTTTTTTTTATTGGAGTCAGCTTCTTGGTGATGACAATGTTGCAGAACCAAAACCAAAGGCAACCCAGGTTTTTTTTTTTCAGCAGCAGCATATACCACCTGGAGAAGTTAACGACTTTTTTTTTAATTCAGCTTCAGCATCCACTGTGCCGCAAACTAATTTTTTTTTGCGTTGGACTCCAGAACTTCATGAGGCCTTTGTGGTTTTTTTTAATCAGCTTGGTGGNANGGCTACTCCAAAGGGTGTTTTTTTTTTGATGAAAGTTGAGGGCCTTACCATCTATCATGTAAAAAGCCACCTTCAGAAGTACAGAACTGCCAGATACAAACCTGAGTCATCAGAAGGAACTTCTGAGAAAAAGATTAGTTTTTTTTTAGAAATGAAATCTCTAGACTTGAAAACTTTTTTTTGGATCACCGAAGCATTGCGGTTGCAGATGGAACTCCTTTTTTTTCTTCANGAACAACTCGAGATTCAAATTGAAAACCAAGGGAAACACCTTCAGTTTTTTTTTGAGAAACAGAAAGAGATGGGCGACAACAAGGGTAATTTTTTTTCTTCCCCTTCAAACGCGCCTTCTGCCGCGCTCTCAGACACGGCACCACCTTCTCCACGGGTAGACAATTTAGAAACCTCAATTGAGGAACATGACAGCAGATCAAGAAGCAACACTGACATTCCTTTTTTTTGTTCCCAGGATGCAAGCGCAAAGCAAAGGGAAGCAGAGCCATTCTCGGAGAGACCCATCGCCAAAACGTTGTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00934	85085	89873	+

Gene family

Gene family	subfamily
Transcription Factors Family	G2-like

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000934s00021597.1	PF00249.26	Myb_DNA-binding	292	340	7.00E-10
Glyur000934s00021597.1	PF14379.1	Myb_CC_LHEQLE	374	413	1.90E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.674
SRR1783600	control	4.198
SRR1783602	moderate drought stress	6.135
SRR1811619	moderate drought stress	6.680

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.726
DRR006520	Root Summer glycyrrhizin high producing strain	4.401
DRR006521	Root Winter glycyrrhizin high producing strain	3.136
DRR006522	Root Winter glycyrrhizin high producing strain	2.712
DRR006523	Root Summer glycyrrhizin low producing strain	11.710
DRR006524	Root Summer glycyrrhizin low producing strain	12.116
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.697
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.015

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.134
SRR2868004	Drought Stress(Tissue:root)	0.170
SRR2967015	Control (Tissue:root)	0.167

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.012
SRR9715740	Leave	0.196
SRR9715741	Leave	0.304
SRR9715739	Root	0.018
SRR9715742	Root	0.060
SRR9715743	Root	0.032

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.022
SRR8749028	MeJA induced 9h	0.096
SRR8749029	MeJA induced 9h	0.066
SRR8749030	Uninduced	0.195
SRR8749031	Uninduced	0.282
SRR8749032	Uninduced	0.075

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.133
SRR8400027	Control-Root	0.132