Gene detail information of Glyur000937s00031571.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G07040.1 | 9.00E-43 | RING/U-box superfamily protein |
| NR | KEH32994.1 | 8.95E-77 | zinc finger, C3HC4 type (RING finger) protein [Medicago truncatula] |
| Swissprot | tr|Q9FL42|ATL69_ARATH | 1.00E-65 | Putative RING-H2 finger protein ATL69 |
| trEMBL | tr|A0A072UT50|A0A072UT50_MEDTR | 3.00E-77 | Zinc finger, C3HC4 type (RING finger) protein {ECO:0000313|EMBL:KEH32994.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00937 | 26065 | 26565 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000937s00031571.1 | PF13639.1 | zf-RING_2 | 102 | 143 | 5.10E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.019 |
| SRR1811619 | moderate drought stress | 0.076 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.223 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.217 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.830 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.411 |
| SRR2967015 | Control (Tissue:root) | 0.403 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.176 |
| SRR9715739 | Root | 0.100 |
| SRR9715742 | Root | 0.351 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.270 |
| SRR8749028 | MeJA induced 9h | 0.265 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.502 |
| SRR8400027 | Control-Root | 0.327 |