Gene detail information of Glyur000937s00031573.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G74320.12.00E-143Protein kinase superfamily protein
NRXP_003598417.10Choline/ethanolamine kinase [Medicago truncatula]
COGYP_007206764.14.00E-11choline kinase [Singulisphaera acidiphila DSM 18658]
Swissprottr|Q8L518|CK2_ARATH2.00E-177Probable choline kinase 2
trEMBLtr|G7IVT5|G7IVT5_MEDTR0Choline/ethanolamine kinase {ECO:0000313|EMBL:AES68668.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold009373172839032+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K14156CHK EC:2.7.1.32 2.7.1.82 Glycerophospholipid metabolism map00564
Choline metabolism in cancermap05231


Gene Ontology

molecular_function

GO:0016772  transferase activity, transferring phosphorus-containing groups



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000937s00031573.1PF01633.15Choline_kinase1683693.20E-70


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.163
SRR1783600control9.872
SRR1783602moderate drought stress10.177
SRR1811619moderate drought stress9.804

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain10.112
DRR006520Root Summer glycyrrhizin high producing strain9.902
DRR006521Root Winter glycyrrhizin high producing strain45.414
DRR006522Root Winter glycyrrhizin high producing strain45.013
DRR006523Root Summer glycyrrhizin low producing strain9.971
DRR006524Root Summer glycyrrhizin low producing strain10.057
DRR006525Leaf Summer glycyrrhizin high producing strain2.144
DRR006526Leaf Summer glycyrrhizin high producing strain2.248

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)5.677
SRR2868004Drought Stress(Tissue:root)6.238
SRR2967015Control (Tissue:root)5.254

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.759
SRR9715740Leave2.923
SRR9715741Leave1.338
SRR9715739Root1.217
SRR9715742Root4.529
SRR9715743Root4.178

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h7.546
SRR8749028MeJA induced 9h9.311
SRR8749029MeJA induced 9h4.165
SRR8749030Uninduced5.141
SRR8749031Uninduced2.849
SRR8749032Uninduced1.812

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root21.915
SRR8400027Control-Root19.439

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved