Gene detail information of Glyur000938s00033431.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G25630.11.00E-125fibrillarin 2
NRXP_007137861.17.92E-166hypothetical protein PHAVU_009G161800g [Phaseolus vulgaris]
COGYP_182596.16.00E-66fibrillarin [Thermococcus kodakarensis KOD1]
Swissprottr|Q94AH9|MD36A_ARATH2.00E-159Mediator of RNA polymerase II transcription subunit 36a
trEMBLtr|V7AX24|V7AX24_PHAVU3.00E-166Uncharacterized protein {ECO:0000313|EMBL:ESW09855.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0093846648249-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K14563NOP1, FBL EC:2.1.1.- Ribosome biogenesis in eukaryotes map03008


Gene Ontology

biological_process

GO:0006364  rRNA processing

GO:0008033  tRNA processing


molecular_function

GO:0003723  RNA binding

GO:0008168  methyltransferase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000938s00033431.1PF01269.12Fibrillarin763031.20E-110


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.465
SRR1783600control3.428
SRR1783602moderate drought stress5.110
SRR1811619moderate drought stress5.391

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain4.426
DRR006520Root Summer glycyrrhizin high producing strain4.596
DRR006521Root Winter glycyrrhizin high producing strain3.531
DRR006522Root Winter glycyrrhizin high producing strain3.646
DRR006523Root Summer glycyrrhizin low producing strain9.870
DRR006524Root Summer glycyrrhizin low producing strain9.862
DRR006525Leaf Summer glycyrrhizin high producing strain1.984
DRR006526Leaf Summer glycyrrhizin high producing strain1.762

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)11.404
SRR2868004Drought Stress(Tissue:root)10.030
SRR2967015Control (Tissue:root)9.258

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave4.023
SRR9715740Leave4.072
SRR9715741Leave3.868
SRR9715739Root2.613
SRR9715742Root5.783
SRR9715743Root5.890

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h20.568
SRR8749028MeJA induced 9h11.869
SRR8749029MeJA induced 9h17.034
SRR8749030Uninduced1.707
SRR8749031Uninduced0.605
SRR8749032Uninduced1.236

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root6.674
SRR8400027Control-Root5.537

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved