Gene detail information of Glyur000938s00033437.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G23980.1 | 4.00E-70 | RING/U-box superfamily protein |
| NR | XP_003532021.1 | 3.95E-168 | PREDICTED: RING-H2 finger protein ATL47-like [Glycine max] |
| Swissprot | tr|Q9FL07|ATL46_ARATH | 3.00E-111 | RING-H2 finger protein ATL46 |
| trEMBL | tr|I1KXI8|I1KXI8_SOYBN | 1.00E-168 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G39940.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00938 | 68306 | 70426 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000938s00033437.1 | PF13639.1 | zf-RING_2 | 107 | 150 | 6.10E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.333 |
| SRR1783600 | control | 7.478 |
| SRR1783602 | moderate drought stress | 8.685 |
| SRR1811619 | moderate drought stress | 8.530 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.214 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.044 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.588 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.591 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.190 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.998 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.402 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.155 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 11.422 |
| SRR2868004 | Drought Stress(Tissue:root) | 12.976 |
| SRR2967015 | Control (Tissue:root) | 8.492 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.499 |
| SRR9715740 | Leave | 6.400 |
| SRR9715741 | Leave | 3.765 |
| SRR9715739 | Root | 1.452 |
| SRR9715742 | Root | 3.200 |
| SRR9715743 | Root | 3.086 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.442 |
| SRR8749028 | MeJA induced 9h | 1.803 |
| SRR8749029 | MeJA induced 9h | 0.758 |
| SRR8749030 | Uninduced | 0.609 |
| SRR8749031 | Uninduced | 0.135 |
| SRR8749032 | Uninduced | 0.180 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 15.971 |
| SRR8400027 | Control-Root | 11.698 |