Gene detail information of Glyur000939s00023542.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT4G17260.1 | 2.00E-156 | Lactate/malate dehydrogenase family protein |
NR | XP_003608731.1 | 0 | L-lactate dehydrogenase [Medicago truncatula] |
COG | YP_003889602.1 | 6.00E-89 | L-lactate dehydrogenase [Cyanothece sp. PCC 7822] |
Swissprot | tr|P22988|LDHA_HORVU | 7.00E-169 | L-lactate dehydrogenase A |
trEMBL | tr|G7JIY5|G7JIY5_MEDTR | 0 | L-lactate dehydrogenase {ECO:0000256|RuleBase:RU000496} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00939 | 17741 | 20892 | - |
Gene family
Gene family | subfamily |
---|---|
-- | -- |
KEGG pathway
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur000939s00023542.1 | PF00056.18 | Ldh_1_N | 38 | 177 | 1.10E-42 |
Glyur000939s00023542.1 | PF02866.13 | Ldh_1_C | 180 | 343 | 4.80E-34 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 50.096 |
SRR1783600 | control | 50.461 |
SRR1783602 | moderate drought stress | 26.035 |
SRR1811619 | moderate drought stress | 26.125 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 15.654 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 15.520 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 4.095 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 3.930 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 5.062 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 5.318 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.760 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.858 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 56.611 |
SRR2868004 | Drought Stress(Tissue:root) | 49.209 |
SRR2967015 | Control (Tissue:root) | 53.225 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 7.875 |
SRR9715740 | Leave | 3.662 |
SRR9715741 | Leave | 6.102 |
SRR9715739 | Root | 55.344 |
SRR9715742 | Root | 26.427 |
SRR9715743 | Root | 32.007 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 38.371 |
SRR8749028 | MeJA induced 9h | 40.985 |
SRR8749029 | MeJA induced 9h | 29.620 |
SRR8749030 | Uninduced | 22.347 |
SRR8749031 | Uninduced | 7.751 |
SRR8749032 | Uninduced | 19.324 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 45.790 |
SRR8400027 | Control-Root | 44.778 |