Gene detail information of Glyur000939s00023542.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G17260.12.00E-156Lactate/malate dehydrogenase family protein
NRXP_003608731.10L-lactate dehydrogenase [Medicago truncatula]
COGYP_003889602.16.00E-89L-lactate dehydrogenase [Cyanothece sp. PCC 7822]
Swissprottr|P22988|LDHA_HORVU7.00E-169L-lactate dehydrogenase A
trEMBLtr|G7JIY5|G7JIY5_MEDTR0L-lactate dehydrogenase {ECO:0000256|RuleBase:RU000496}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold009391774120892-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00016LDH, ldh EC:1.1.1.27 Glycolysis / Gluconeogenesis map00010
Pyruvate metabolismmap00620
Propanoate metabolismmap00640
Cysteine and methionine metabolismmap00270
Glucagon signaling pathwaymap04922


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process

GO:0019752  carboxylic acid metabolic process

GO:0055114  oxidation-reduction process


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0003824  catalytic activity

GO:0004459  L-lactate dehydrogenase activity

GO:0016491  oxidoreductase activity

GO:0016616  oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

"

Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000939s00023542.1PF00056.18Ldh_1_N381771.10E-42
Glyur000939s00023542.1PF02866.13Ldh_1_C1803434.80E-34


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control50.096
SRR1783600control50.461
SRR1783602moderate drought stress26.035
SRR1811619moderate drought stress26.125

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain15.654
DRR006520Root Summer glycyrrhizin high producing strain15.520
DRR006521Root Winter glycyrrhizin high producing strain4.095
DRR006522Root Winter glycyrrhizin high producing strain3.930
DRR006523Root Summer glycyrrhizin low producing strain5.062
DRR006524Root Summer glycyrrhizin low producing strain5.318
DRR006525Leaf Summer glycyrrhizin high producing strain1.760
DRR006526Leaf Summer glycyrrhizin high producing strain1.858

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)56.611
SRR2868004Drought Stress(Tissue:root)49.209
SRR2967015Control (Tissue:root)53.225

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave7.875
SRR9715740Leave3.662
SRR9715741Leave6.102
SRR9715739Root55.344
SRR9715742Root26.427
SRR9715743Root32.007

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h38.371
SRR8749028MeJA induced 9h40.985
SRR8749029MeJA induced 9h29.620
SRR8749030Uninduced22.347
SRR8749031Uninduced7.751
SRR8749032Uninduced19.324

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root45.790
SRR8400027Control-Root44.778