Gene detail information of Glyur000942s00027136.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G50440.3 | 1.00E-102 | RING/FYVE/PHD zinc finger superfamily protein |
| NR | NP_001240116.1 | 4.90E-168 | uncharacterized protein LOC100789593 [Glycine max] |
| trEMBL | tr|C6TC27|C6TC27_SOYBN | 2.00E-168 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G00320.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00942 | 4956 | 9284 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000942s00027136.1 | PF12906.2 | RINGv | 73 | 120 | 2.80E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 21.096 |
| SRR1783600 | control | 21.119 |
| SRR1783602 | moderate drought stress | 20.459 |
| SRR1811619 | moderate drought stress | 20.046 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 19.281 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 18.671 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 25.185 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 25.065 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 21.287 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 21.440 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.085 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.540 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 28.678 |
| SRR2868004 | Drought Stress(Tissue:root) | 30.390 |
| SRR2967015 | Control (Tissue:root) | 24.533 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 12.730 |
| SRR9715740 | Leave | 16.489 |
| SRR9715741 | Leave | 17.379 |
| SRR9715739 | Root | 5.905 |
| SRR9715742 | Root | 6.865 |
| SRR9715743 | Root | 8.602 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 47.810 |
| SRR8749028 | MeJA induced 9h | 49.347 |
| SRR8749029 | MeJA induced 9h | 49.672 |
| SRR8749030 | Uninduced | 72.346 |
| SRR8749031 | Uninduced | 133.770 |
| SRR8749032 | Uninduced | 87.033 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 31.837 |
| SRR8400027 | Control-Root | 27.580 |