Gene detail information of Glyur000942s00027136.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G50440.31.00E-102RING/FYVE/PHD zinc finger superfamily protein
NRNP_001240116.14.90E-168uncharacterized protein LOC100789593 [Glycine max]
trEMBLtr|C6TC27|C6TC27_SOYBN2.00E-168Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G00320.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0094249569284-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000942s00027136.1PF12906.2RINGv731202.80E-09


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control21.096
SRR1783600control21.119
SRR1783602moderate drought stress20.459
SRR1811619moderate drought stress20.046

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain19.281
DRR006520Root Summer glycyrrhizin high producing strain18.671
DRR006521Root Winter glycyrrhizin high producing strain25.185
DRR006522Root Winter glycyrrhizin high producing strain25.065
DRR006523Root Summer glycyrrhizin low producing strain21.287
DRR006524Root Summer glycyrrhizin low producing strain21.440
DRR006525Leaf Summer glycyrrhizin high producing strain12.085
DRR006526Leaf Summer glycyrrhizin high producing strain11.540

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)28.678
SRR2868004Drought Stress(Tissue:root)30.390
SRR2967015Control (Tissue:root)24.533

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave12.730
SRR9715740Leave16.489
SRR9715741Leave17.379
SRR9715739Root5.905
SRR9715742Root6.865
SRR9715743Root8.602

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h47.810
SRR8749028MeJA induced 9h49.347
SRR8749029MeJA induced 9h49.672
SRR8749030Uninduced72.346
SRR8749031Uninduced133.770
SRR8749032Uninduced87.033

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root31.837
SRR8400027Control-Root27.580