Gene detail information of Glyur000945s00028119.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G03000.2 | 1.00E-118 | RING/U-box superfamily protein |
| NR | XP_006600327.1 | 0 | PREDICTED: putative E3 ubiquitin-protein ligase RF298-like isoform X1 [Glycine max] |
| Swissprot | tr|Q0WPJ7|RF298_ARATH | 4.00E-174 | Putative E3 ubiquitin-protein ligase RF298 |
| trEMBL | tr|I1MRB7|I1MRB7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G02360.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00945 | 732 | 4812 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
| EAR motif-containing Proteins | other |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000945s00028119.1 | PF13920.1 | zf-C3HC4_3 | 820 | 868 | 6.20E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.019 |
| SRR1783600 | control | 4.016 |
| SRR1783602 | moderate drought stress | 7.284 |
| SRR1811619 | moderate drought stress | 7.243 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.243 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.129 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.570 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.579 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.840 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.768 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.191 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.276 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 8.793 |
| SRR2868004 | Drought Stress(Tissue:root) | 10.095 |
| SRR2967015 | Control (Tissue:root) | 10.135 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.987 |
| SRR9715740 | Leave | 5.557 |
| SRR9715741 | Leave | 6.377 |
| SRR9715739 | Root | 0.677 |
| SRR9715742 | Root | 3.281 |
| SRR9715743 | Root | 2.603 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.435 |
| SRR8749028 | MeJA induced 9h | 4.416 |
| SRR8749029 | MeJA induced 9h | 2.259 |
| SRR8749030 | Uninduced | 4.725 |
| SRR8749031 | Uninduced | 3.504 |
| SRR8749032 | Uninduced | 2.154 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 6.686 |
| SRR8400027 | Control-Root | 6.276 |