Gene detail information of Glyur000945s00028122.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G18930.14.00E-121Adenosylmethionine decarboxylase family protein
NRXP_003528663.10PREDICTED: S-adenosylmethionine decarboxylase proenzyme-like [Glycine max]
Swissprottr|Q3E9D5|DCAM4_ARATH4.00E-150S-adenosylmethionine decarboxylase 1 beta chain {ECO:0000250|UniProtKB:P17707} (Precursor)
trEMBLtr|I1KN62|I1KN62_SOYBN0S-adenosylmethionine decarboxylase proenzyme {ECO:0000256|PIRNR:PIRNR001355}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold009451543816487-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01611speD, AMD1 EC:4.1.1.50 Cysteine and methionine metabolism map00270
Arginine and proline metabolismmap00330


Gene Ontology

biological_process

GO:0006597  spermine biosynthetic process

GO:0008295  spermidine biosynthetic process


molecular_function

GO:0004014  adenosylmethionine decarboxylase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000945s00028122.1PF01536.11SAM_decarbox42993.50E-94


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.011
SRR1783600control0.991
SRR1783602moderate drought stress1.424
SRR1811619moderate drought stress1.479

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.441
DRR006520Root Summer glycyrrhizin high producing strain1.826
DRR006521Root Winter glycyrrhizin high producing strain0.128
DRR006522Root Winter glycyrrhizin high producing strain0.275
DRR006523Root Summer glycyrrhizin low producing strain1.934
DRR006524Root Summer glycyrrhizin low producing strain1.530
DRR006525Leaf Summer glycyrrhizin high producing strain0.620
DRR006526Leaf Summer glycyrrhizin high producing strain0.618

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)3.212
SRR2868004Drought Stress(Tissue:root)3.999
SRR2967015Control (Tissue:root)4.085

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.239
SRR9715740Leave0.721
SRR9715741Leave0.507
SRR9715739Root1.946
SRR9715742Root1.342
SRR9715743Root1.829

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h2.713
SRR8749028MeJA induced 9h1.535
SRR8749029MeJA induced 9h1.330
SRR8749030Uninduced0.207
SRR8749031Uninduced0.000
SRR8749032Uninduced0.217

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root3.070
SRR8400027Control-Root2.623

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved