Gene detail information of Glyur000945s00028125.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G06260.1 | 2.00E-145 | galacturonosyltransferase-like 4 |
| NR | KEH32259.1 | 0 | CAZy family GT8 glycosyltransferase [Medicago truncatula] |
| COG | YP_007062961.1 | 3.00E-18 | LPS:glycosyltransferase [Synechococcus sp. PCC 6312] |
| Swissprot | tr|Q9M8J2|GATL4_ARATH | 0 | Probable galacturonosyltransferase-like 4 |
| trEMBL | tr|A0A072UQZ6|A0A072UQZ6_MEDTR | 0 | CAZy family GT8 glycosyltransferase {ECO:0000313|EMBL:KEH32259.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00945 | 25274 | 26311 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT8 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000945s00028125.1 | PF01501.15 | Glyco_transf_8 | 61 | 318 | 4.30E-68 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.035 |
| SRR1783600 | control | 0.035 |
| SRR1783602 | moderate drought stress | 0.034 |
| SRR1811619 | moderate drought stress | 0.035 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.106 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.107 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.090 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.089 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.163 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.367 |
| SRR2967015 | Control (Tissue:root) | 0.196 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.271 |
| SRR9715740 | Leave | 0.061 |
| SRR9715741 | Leave | 0.724 |
| SRR9715739 | Root | 0.383 |
| SRR9715742 | Root | 0.060 |
| SRR9715743 | Root | 0.259 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.060 |
| SRR8749028 | MeJA induced 9h | 0.064 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.211 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.130 |
| SRR8400027 | Control-Root | 0.142 |