Gene detail information of Glyur000945s00028136.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G12560.2 | 2.00E-24 | F-box and associated interaction domains-containing protein |
| NR | KEH35807.1 | 2.71E-134 | galactose oxidase [Medicago truncatula] |
| Swissprot | tr|Q9SU30|CPR30_ARATH | 5.00E-26 | F-box protein CPR30 |
| trEMBL | tr|A0A072V1V7|A0A072V1V7_MEDTR | 1.00E-134 | Galactose oxidase {ECO:0000313|EMBL:KEH35807.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00945 | 66381 | 73758 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000945s00028136.1 | PF00646.28 | F-box | 17 | 52 | 6.20E-08 |
| Glyur000945s00028136.1 | PF00646.28 | F-box | 446 | 484 | 3.40E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.336 |
| SRR1783600 | control | 0.310 |
| SRR1783602 | moderate drought stress | 0.029 |
| SRR1811619 | moderate drought stress | 0.076 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.712 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.628 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.580 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.508 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.738 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.125 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.857 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.849 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.934 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.364 |
| SRR2967015 | Control (Tissue:root) | 2.282 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.648 |
| SRR9715740 | Leave | 1.911 |
| SRR9715741 | Leave | 0.897 |
| SRR9715739 | Root | 0.158 |
| SRR9715742 | Root | 0.217 |
| SRR9715743 | Root | 0.126 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.893 |
| SRR8749028 | MeJA induced 9h | 3.194 |
| SRR8749029 | MeJA induced 9h | 3.097 |
| SRR8749030 | Uninduced | 2.189 |
| SRR8749031 | Uninduced | 3.431 |
| SRR8749032 | Uninduced | 1.410 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.198 |
| SRR8400027 | Control-Root | 0.926 |