Gene detail information of Glyur000947s00021199.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G50230.1 | 0 | Transducin/WD40 repeat-like superfamily protein |
| NR | XP_004501842.1 | 0 | PREDICTED: protein tipD-like [Cicer arietinum] |
| COG | YP_007142397.1 | 2.00E-41 | WD-40 repeat-containing protein [Crinalium epipsammum PCC 9333] |
| Swissprot | tr|Q3Y8L7|DAW1_CHLRE | 1.00E-27 | Dynein assembly factor with WDR repeat domains 1 |
| trEMBL | tr|V7CBB8|V7CBB8_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW27497.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00947 | 93271 | 96334 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000947s00021199.1 | PF08614.6 | ATG16 | 46 | 174 | 9.10E-16 |
| Glyur000947s00021199.1 | PF00400.27 | WD40 | 221 | 258 | 3.30E-08 |
| Glyur000947s00021199.1 | PF00400.27 | WD40 | 306 | 343 | 9.00E-08 |
| Glyur000947s00021199.1 | PF00400.27 | WD40 | 348 | 384 | 6.90E-06 |
| Glyur000947s00021199.1 | PF00400.27 | WD40 | 389 | 426 | 0.025 |
| Glyur000947s00021199.1 | PF00400.27 | WD40 | 451 | 472 | 0.00031 |
| Glyur000947s00021199.1 | PF00400.27 | WD40 | 477 | 513 | 1.80E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.428 |
| SRR1783600 | control | 5.324 |
| SRR1783602 | moderate drought stress | 4.944 |
| SRR1811619 | moderate drought stress | 4.954 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.730 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.514 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.522 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.302 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.060 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.069 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.124 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.208 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 8.629 |
| SRR2868004 | Drought Stress(Tissue:root) | 11.212 |
| SRR2967015 | Control (Tissue:root) | 10.390 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 6.023 |
| SRR9715740 | Leave | 5.649 |
| SRR9715741 | Leave | 7.437 |
| SRR9715739 | Root | 1.836 |
| SRR9715742 | Root | 5.762 |
| SRR9715743 | Root | 5.005 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.780 |
| SRR8749028 | MeJA induced 9h | 15.452 |
| SRR8749029 | MeJA induced 9h | 6.258 |
| SRR8749030 | Uninduced | 13.793 |
| SRR8749031 | Uninduced | 9.026 |
| SRR8749032 | Uninduced | 6.263 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 9.648 |
| SRR8400027 | Control-Root | 11.348 |