Gene detail information of Glyur000949s00028887.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G44130.1 | 9.00E-52 | Galactose oxidase/kelch repeat superfamily protein |
| NR | NP_001265895.1 | 0 | F-box/kelch-repeat protein At2g44130-like [Cicer arietinum] |
| COG | YP_004175646.1 | 2.00E-12 | putative LysR family transcriptional regulator [Anaerolinea thermophila UNI-1] |
| Swissprot | tr|O80582|FBK46_ARATH | 9.00E-60 | F-box/kelch-repeat protein At2g44130 |
| trEMBL | tr|E7BSD6|E7BSD6_CICAR | 0 | F-box family protein {ECO:0000313|EMBL:ADU20205.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00949 | 24522 | 25589 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000949s00028887.1 | PF00646.28 | F-box | 10 | 51 | 0.00023 |
| Glyur000949s00028887.1 | PF13964.1 | Kelch_6 | 120 | 168 | 4.60E-06 |
| Glyur000949s00028887.1 | PF01344.20 | Kelch_1 | 169 | 214 | 7.60E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.853 |
| SRR1783600 | control | 3.724 |
| SRR1783602 | moderate drought stress | 36.416 |
| SRR1811619 | moderate drought stress | 36.900 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 71.290 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 70.537 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.936 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.940 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 61.402 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 64.743 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 48.207 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 45.991 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 16.357 |
| SRR2868004 | Drought Stress(Tissue:root) | 44.813 |
| SRR2967015 | Control (Tissue:root) | 100.224 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 61.739 |
| SRR9715740 | Leave | 44.408 |
| SRR9715741 | Leave | 44.742 |
| SRR9715739 | Root | 68.823 |
| SRR9715742 | Root | 44.820 |
| SRR9715743 | Root | 48.653 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 203.283 |
| SRR8749028 | MeJA induced 9h | 123.495 |
| SRR8749029 | MeJA induced 9h | 167.098 |
| SRR8749030 | Uninduced | 55.811 |
| SRR8749031 | Uninduced | 55.954 |
| SRR8749032 | Uninduced | 46.168 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 5.438 |
| SRR8400027 | Control-Root | 5.763 |