Gene detail information of Glyur000949s00028891.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G13550.12.00E-64Ubiquitin-conjugating enzyme family protein
NRXP_004504327.12.45E-107PREDICTED: constitutive photomorphogenesis protein 10-like [Cicer arietinum]
COGYP_008797956.12.00E-15ubiquitin-conjugating enzyme E2-like protein [Candidatus Caldiarchaeum subterraneum]
Swissprottr|Q9LJD7|COP10_ARATH3.00E-83Constitutive photomorphogenesis protein 10
trEMBLtr|G7LHZ4|G7LHZ4_MEDTR5.00E-102Uncharacterized protein {ECO:0000313|EMBL:AFK35845.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold009495090053742-


Gene family

Gene familysubfamily
Ubiquitin FamilyUBC


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K20217UBE2E EC:2.3.2.23 Ubiquitin mediated proteolysis map04120


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000949s00028891.1PF00179.21UQ_con251604.00E-38


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control33.698
SRR1783600control34.315
SRR1783602moderate drought stress49.452
SRR1811619moderate drought stress49.598

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain31.320
DRR006520Root Summer glycyrrhizin high producing strain30.743
DRR006521Root Winter glycyrrhizin high producing strain28.410
DRR006522Root Winter glycyrrhizin high producing strain27.754
DRR006523Root Summer glycyrrhizin low producing strain40.334
DRR006524Root Summer glycyrrhizin low producing strain40.185
DRR006525Leaf Summer glycyrrhizin high producing strain12.854
DRR006526Leaf Summer glycyrrhizin high producing strain12.986

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)26.735
SRR2868004Drought Stress(Tissue:root)30.631
SRR2967015Control (Tissue:root)33.149

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave10.767
SRR9715740Leave13.299
SRR9715741Leave10.641
SRR9715739Root12.233
SRR9715742Root17.451
SRR9715743Root16.506

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h19.081
SRR8749028MeJA induced 9h9.053
SRR8749029MeJA induced 9h15.360
SRR8749030Uninduced6.104
SRR8749031Uninduced6.824
SRR8749032Uninduced7.354

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root23.970
SRR8400027Control-Root24.242

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved