Gene detail information of Glyur000949s00028896.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G13560.30O-Glycosyl hydrolases family 17 protein
NRXP_004504325.10PREDICTED: glucan endo-1,3-beta-glucosidase 4-like [Cicer arietinum]
Swissprottr|Q94CD8|E134_ARATH0Glucan endo-1,3-beta-glucosidase 4 (Precursor)
trEMBLtr|G7LIL6|G7LIL6_MEDTR0O-glycosyl hydrolase family 17 protein {ECO:0000313|EMBL:AET04191.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold009497991883785-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH17,CBM43


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K19892GN4 EC:3.2.1.39 Starch and sucrose metabolism map00500


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000949s00028896.1PF00332.13Glyco_hydro_17313512.40E-81
Glyur000949s00028896.1PF07983.8X83664362.70E-17


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control19.935
SRR1783600control20.388
SRR1783602moderate drought stress14.721
SRR1811619moderate drought stress14.687

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain20.617
DRR006520Root Summer glycyrrhizin high producing strain20.760
DRR006521Root Winter glycyrrhizin high producing strain6.067
DRR006522Root Winter glycyrrhizin high producing strain6.050
DRR006523Root Summer glycyrrhizin low producing strain15.087
DRR006524Root Summer glycyrrhizin low producing strain15.187
DRR006525Leaf Summer glycyrrhizin high producing strain6.449
DRR006526Leaf Summer glycyrrhizin high producing strain6.584

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)27.316
SRR2868004Drought Stress(Tissue:root)18.095
SRR2967015Control (Tissue:root)15.901

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave8.777
SRR9715740Leave9.063
SRR9715741Leave6.616
SRR9715739Root20.451
SRR9715742Root20.660
SRR9715743Root18.686

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h22.620
SRR8749028MeJA induced 9h12.382
SRR8749029MeJA induced 9h10.382
SRR8749030Uninduced1.997
SRR8749031Uninduced0.551
SRR8749032Uninduced0.697

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root20.550
SRR8400027Control-Root22.737

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved