Gene detail information of Glyur000950s00029449.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G54220.1 | 3.00E-166 | GRAS family transcription factor |
| NR | XP_007140014.1 | 0 | hypothetical protein PHAVU_008G077000g [Phaseolus vulgaris] |
| Swissprot | tr|Q9AVK4|SCR_PEA | 0 | Protein SCARECROW |
| trEMBL | tr|V7B559|V7B559_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW12008.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00950 | 27120 | 30124 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | GRAS |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000950s00029449.1 | PF03514.9 | GRAS | 487 | 827 | 2.30E-115 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.128 |
| SRR1783600 | control | 1.114 |
| SRR1783602 | moderate drought stress | 1.069 |
| SRR1811619 | moderate drought stress | 1.116 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.923 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.994 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.653 |
| SRR2868004 | Drought Stress(Tissue:root) | 8.512 |
| SRR2967015 | Control (Tissue:root) | 11.066 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.586 |
| SRR9715740 | Leave | 0.337 |
| SRR9715741 | Leave | 0.347 |
| SRR9715739 | Root | 1.893 |
| SRR9715742 | Root | 3.178 |
| SRR9715743 | Root | 1.548 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 15.900 |
| SRR8749028 | MeJA induced 9h | 23.597 |
| SRR8749029 | MeJA induced 9h | 8.326 |
| SRR8749030 | Uninduced | 4.920 |
| SRR8749031 | Uninduced | 2.214 |
| SRR8749032 | Uninduced | 2.165 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 3.037 |
| SRR8400027 | Control-Root | 3.093 |