Gene detail information of Glyur000950s00029456.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G42430.1 | 4.00E-15 | lateral organ boundaries-domain 16 |
| NR | XP_009354924.1 | 4.89E-18 | PREDICTED: LOB domain-containing protein 16-like [Pyrus x bretschneideri] |
| Swissprot | tr|Q9SLB7|LBD16_ARATH | 1.00E-17 | LOB domain-containing protein 16 |
| trEMBL | tr|I1N9P5|I1N9P5_SOYBN | 2.00E-18 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G34590.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00950 | 76157 | 82122 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | LOB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000950s00029456.1 | PF03195.9 | DUF260 | 28 | 78 | 5.80E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.128 |
| SRR1783600 | control | 0.057 |
| SRR1783602 | moderate drought stress | 0.545 |
| SRR1811619 | moderate drought stress | 1.013 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.302 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.005 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.241 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.589 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.315 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.228 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.515 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.286 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.356 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.207 |
| SRR2967015 | Control (Tissue:root) | 0.356 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.022 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.588 |
| SRR8749028 | MeJA induced 9h | 0.278 |
| SRR8749029 | MeJA induced 9h | 0.287 |
| SRR8749030 | Uninduced | 0.086 |
| SRR8749031 | Uninduced | 0.486 |
| SRR8749032 | Uninduced | 0.129 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.212 |
| SRR8400027 | Control-Root | 0.122 |