Gene detail information of Glyur000952s00025631.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G25810.14.00E-116xyloglucan endotransglycosylase 6
NRXP_007154667.12.99E-176hypothetical protein PHAVU_003G137600g [Phaseolus vulgaris]
COGYP_005432194.15.00E-13putative beta-glucanase [Selenomonas ruminantium subsp. lactilytica TAM6421]
Swissprottr|Q38910|XTH23_ARATH7.00E-149Probable xyloglucan endotransglucosylase/hydrolase protein 23 (Precursor)
trEMBLtr|V7CCR5|V7CCR5_PHAVU1.00E-176Xyloglucan endotransglucosylase/hydrolase {ECO:0000256|RuleBase:RU361120}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold009524470546398+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH16


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process

GO:0006073  cellular glucan metabolic process


cellular_component

GO:0005618  cell wall

GO:0048046  apoplast


molecular_function

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0016762  xyloglucan:xyloglucosyl transferase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000952s00025631.1PF00722.16Glyco_hydro_16242032.50E-59
Glyur000952s00025631.1PF06955.7XET_C2292808.80E-23


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control102.073
SRR1783600control102.116
SRR1783602moderate drought stress402.266
SRR1811619moderate drought stress400.734

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain10.685
DRR006520Root Summer glycyrrhizin high producing strain10.710
DRR006521Root Winter glycyrrhizin high producing strain19.601
DRR006522Root Winter glycyrrhizin high producing strain18.572
DRR006523Root Summer glycyrrhizin low producing strain15.208
DRR006524Root Summer glycyrrhizin low producing strain15.751
DRR006525Leaf Summer glycyrrhizin high producing strain17.454
DRR006526Leaf Summer glycyrrhizin high producing strain17.470

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)19.798
SRR2868004Drought Stress(Tissue:root)21.055
SRR2967015Control (Tissue:root)54.270

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave181.036
SRR9715740Leave103.997
SRR9715741Leave321.340
SRR9715739Root108.455
SRR9715742Root100.846
SRR9715743Root96.716

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h16.973
SRR8749028MeJA induced 9h51.569
SRR8749029MeJA induced 9h77.601
SRR8749030Uninduced51.043
SRR8749031Uninduced14.672
SRR8749032Uninduced29.574

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root55.241
SRR8400027Control-Root95.487

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved