Gene detail information of Glyur000954s00026539.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT1G67730.1 | 1.00E-10 | beta-ketoacyl reductase 1 |
NR | AFK47548.1 | 4.83E-39 | unknown [Lotus japonicus] |
Swissprot | tr|Q8L9C4|KCR1_ARATH | 2.00E-12 | Very-long-chain 3-oxoacyl-CoA reductase 1 |
trEMBL | tr|I3T4V6|I3T4V6_LOTJA | 2.00E-39 | Uncharacterized protein {ECO:0000313|EMBL:AFK47548.1} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00954 | 63917 | 64186 | - |
Gene family
Gene family | subfamily |
---|---|
-- | -- |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
K10251 | HSD17B12, KAR, IFA38 | EC:1.1.1.62 1.1.1.330 | Fatty acid metabolism | map01212 |
Fatty acid elongation | map00062 | |||
Steroid hormone biosynthesis | map00140 | |||
Biosynthesis of unsaturated fatty acids | map01040 |
Gene OntologyNot hits found. |
Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
-- | -- | -- | -- | -- |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 7.223 |
SRR1783600 | control | 7.453 |
SRR1783602 | moderate drought stress | 10.359 |
SRR1811619 | moderate drought stress | 10.164 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 1.594 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 2.168 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 3.912 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 3.796 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 0.409 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 0.410 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.560 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.507 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 12.792 |
SRR2868004 | Drought Stress(Tissue:root) | 10.256 |
SRR2967015 | Control (Tissue:root) | 10.739 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 6.421 |
SRR9715740 | Leave | 3.010 |
SRR9715741 | Leave | 4.995 |
SRR9715739 | Root | 23.150 |
SRR9715742 | Root | 27.406 |
SRR9715743 | Root | 30.656 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 6.130 |
SRR8749028 | MeJA induced 9h | 3.150 |
SRR8749029 | MeJA induced 9h | 3.588 |
SRR8749030 | Uninduced | 22.760 |
SRR8749031 | Uninduced | 21.431 |
SRR8749032 | Uninduced | 42.693 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 36.748 |
SRR8400027 | Control-Root | 34.741 |