Gene detail information of Glyur000954s00026540.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G67730.1 | 3.00E-57 | beta-ketoacyl reductase 1 |
| NR | KHN24111.1 | 3.96E-126 | Inactive hydroxysteroid dehydrogenase-like protein 1 [Glycine soja] |
| COG | YP_004451517.1 | 2.00E-24 | short-chain dehydrogenase/reductase SDR [Haliscomenobacter hydrossis DSM 1100] |
| Swissprot | tr|Q8L9C4|KCR1_ARATH | 6.00E-78 | Very-long-chain 3-oxoacyl-CoA reductase 1 |
| trEMBL | tr|I1MYK8|I1MYK8_SOYBN | 1.00E-126 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G01500.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00954 | 64559 | 68070 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K10251 | HSD17B12, KAR, IFA38 | EC:1.1.1.62 1.1.1.330 | Fatty acid metabolism | map01212 |
| Fatty acid elongation | map00062 | |||
| Steroid hormone biosynthesis | map00140 | |||
| Biosynthesis of unsaturated fatty acids | map01040 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000954s00026540.1 | PF00106.20 | adh_short | 47 | 224 | 3.60E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.245 |
| SRR1783600 | control | 4.397 |
| SRR1783602 | moderate drought stress | 5.218 |
| SRR1811619 | moderate drought stress | 5.077 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.995 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.925 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.605 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.474 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.267 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.290 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.956 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.008 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 8.200 |
| SRR2868004 | Drought Stress(Tissue:root) | 6.496 |
| SRR2967015 | Control (Tissue:root) | 7.364 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.416 |
| SRR9715740 | Leave | 1.140 |
| SRR9715741 | Leave | 1.783 |
| SRR9715739 | Root | 13.636 |
| SRR9715742 | Root | 14.792 |
| SRR9715743 | Root | 14.102 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.001 |
| SRR8749028 | MeJA induced 9h | 2.121 |
| SRR8749029 | MeJA induced 9h | 1.772 |
| SRR8749030 | Uninduced | 7.757 |
| SRR8749031 | Uninduced | 5.582 |
| SRR8749032 | Uninduced | 14.047 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 25.480 |
| SRR8400027 | Control-Root | 23.282 |