Gene detail information of Glyur000954s00026546.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G24440.1 | 1.00E-89 | RING/U-box superfamily protein |
| NR | XP_004502340.1 | 5.49E-161 | PREDICTED: uncharacterized protein LOC101495141 [Cicer arietinum] |
| trEMBL | tr|V7D2H1|V7D2H1_PHAVU | 2.00E-159 | Uncharacterized protein {ECO:0000313|EMBL:ESW35705.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00954 | 94153 | 96144 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.892 |
| SRR1783600 | control | 5.955 |
| SRR1783602 | moderate drought stress | 13.560 |
| SRR1811619 | moderate drought stress | 13.131 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.583 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.258 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 14.457 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 14.747 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 15.710 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.492 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.772 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.616 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 19.764 |
| SRR2868004 | Drought Stress(Tissue:root) | 35.849 |
| SRR2967015 | Control (Tissue:root) | 30.499 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 18.330 |
| SRR9715740 | Leave | 16.068 |
| SRR9715741 | Leave | 23.650 |
| SRR9715739 | Root | 5.319 |
| SRR9715742 | Root | 6.254 |
| SRR9715743 | Root | 5.649 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.871 |
| SRR8749028 | MeJA induced 9h | 34.829 |
| SRR8749029 | MeJA induced 9h | 25.806 |
| SRR8749030 | Uninduced | 10.078 |
| SRR8749031 | Uninduced | 38.573 |
| SRR8749032 | Uninduced | 37.139 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 21.109 |
| SRR8400027 | Control-Root | 15.452 |