Gene detail information of Glyur000957s00027271.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G61490.3 | 0 | Pectin lyase-like superfamily protein |
| NR | XP_006598941.1 | 0 | PREDICTED: probable polygalacturonase-like isoform X2 [Glycine max] |
| COG | YP_001179193.1 | 2.00E-58 | galacturan 1,4-alpha-galacturonidase [Caldicellulosiruptor saccharolyticus DSM 8903] |
| Swissprot | tr|A7PZL3|PGLR_VITVI | 0 | Probable polygalacturonase |
| trEMBL | tr|K7MF03|K7MF03_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G03680.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00957 | 63372 | 69006 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH28 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000957s00027271.1 | PF00295.12 | Glyco_hydro_28 | 131 | 411 | 5.30E-39 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 23.514 |
| SRR1783600 | control | 23.835 |
| SRR1783602 | moderate drought stress | 21.009 |
| SRR1811619 | moderate drought stress | 21.433 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 24.121 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 23.454 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.275 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.559 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 59.627 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 58.984 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.426 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.296 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 49.619 |
| SRR2868004 | Drought Stress(Tissue:root) | 33.474 |
| SRR2967015 | Control (Tissue:root) | 27.342 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 14.448 |
| SRR9715740 | Leave | 14.349 |
| SRR9715741 | Leave | 21.224 |
| SRR9715739 | Root | 17.773 |
| SRR9715742 | Root | 38.264 |
| SRR9715743 | Root | 31.975 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.447 |
| SRR8749028 | MeJA induced 9h | 5.603 |
| SRR8749029 | MeJA induced 9h | 9.405 |
| SRR8749030 | Uninduced | 8.275 |
| SRR8749031 | Uninduced | 17.636 |
| SRR8749032 | Uninduced | 11.309 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 90.839 |
| SRR8400027 | Control-Root | 79.457 |