Gene detail information of Glyur000959s00024500.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G55120.1 | 4.00E-50 | Chalcone-flavanone isomerase family protein |
| NR | ADV71377.1 | 3.24E-131 | chalcone isomerase 2 [Pueraria montana var. lobata] |
| Swissprot | tr|Q53B75|CF1B1_SOYBN | 3.00E-131 | Chalcone--flavonone isomerase 1B-1 |
| trEMBL | tr|E9M5G2|E9M5G2_PUEML | 1.00E-131 | Chalcone-flavonone isomerase family protein {ECO:0000256|RuleBase:RU361158} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00959 | 5131 | 6883 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01859 | E5.5.1.6 | EC:5.5.1.6 | Flavonoid biosynthesis | map00941 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000959s00024500.1 | PF02431.10 | Chalcone | 19 | 215 | 5.60E-55 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.812 |
| SRR1783600 | control | 0.870 |
| SRR1783602 | moderate drought stress | 0.222 |
| SRR1811619 | moderate drought stress | 0.186 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.175 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.384 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.410 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 132.699 |
| SRR2868004 | Drought Stress(Tissue:root) | 145.086 |
| SRR2967015 | Control (Tissue:root) | 134.703 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.080 |
| SRR9715742 | Root | 0.132 |
| SRR9715743 | Root | 0.110 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.044 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.141 |
| SRR8749031 | Uninduced | 0.177 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 16.679 |
| SRR8400027 | Control-Root | 17.134 |