Gene detail information of Glyur000959s00024501.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G55120.12.00E-35Chalcone-flavanone isomerase family protein
NRNP_001236755.11.27E-94chalcone--flavonone isomerase 1B-1 [Glycine max]
Swissprottr|Q53B75|CF1B1_SOYBN6.00E-97Chalcone--flavonone isomerase 1B-1
trEMBLtr|C6TDI3|C6TDI3_SOYBN5.00E-95Chalcone-flavonone isomerase family protein {ECO:0000256|RuleBase:RU361158}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold009591078714752+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01859E5.5.1.6 EC:5.5.1.6 Flavonoid biosynthesis map00941


Gene Ontology

biological_process

GO:0009813  flavonoid biosynthetic process


molecular_function

GO:0016872  intramolecular lyase activity

GO:0045430  chalcone isomerase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000959s00024501.1PF02431.10Chalcone17879.20E-14
Glyur000959s00024501.1PF02431.10Chalcone951811.40E-20


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.413
SRR1783600control6.133
SRR1783602moderate drought stress5.327
SRR1811619moderate drought stress4.818

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.341
DRR006520Root Summer glycyrrhizin high producing strain3.380
DRR006521Root Winter glycyrrhizin high producing strain1.409
DRR006522Root Winter glycyrrhizin high producing strain1.173
DRR006523Root Summer glycyrrhizin low producing strain1.627
DRR006524Root Summer glycyrrhizin low producing strain1.438
DRR006525Leaf Summer glycyrrhizin high producing strain0.000
DRR006526Leaf Summer glycyrrhizin high producing strain0.000

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)15.874
SRR2868004Drought Stress(Tissue:root)14.496
SRR2967015Control (Tissue:root)16.223

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.269
SRR9715740Leave0.192
SRR9715741Leave0.606
SRR9715739Root5.837
SRR9715742Root2.205
SRR9715743Root2.811

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.208
SRR8749028MeJA induced 9h0.353
SRR8749029MeJA induced 9h0.306
SRR8749030Uninduced0.034
SRR8749031Uninduced0.247
SRR8749032Uninduced0.070

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root17.385
SRR8400027Control-Root29.195

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved