Gene detail information of Glyur000959s00024504.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G55120.12.00E-85Chalcone-flavanone isomerase family protein
NRXP_003592766.12.29E-134Chalcone-flavonone isomerase [Medicago truncatula]
Swissprottr|A4F1Q8|CFI_CLITE1.00E-130Chalcone--flavonone isomerase
trEMBLtr|B7FJK3|B7FJK3_MEDTR9.00E-135Chalcone-flavonone isomerase family protein {ECO:0000256|RuleBase:RU361158}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold009592189825387+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01859E5.5.1.6 EC:5.5.1.6 Flavonoid biosynthesis map00941


Gene Ontology

biological_process

GO:0009813  flavonoid biosynthetic process


molecular_function

GO:0016872  intramolecular lyase activity

GO:0045430  chalcone isomerase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000959s00024504.1PF02431.10Chalcone162132.40E-62


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control60.653
SRR1783600control60.689
SRR1783602moderate drought stress61.028
SRR1811619moderate drought stress60.935

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain29.035
DRR006520Root Summer glycyrrhizin high producing strain28.452
DRR006521Root Winter glycyrrhizin high producing strain26.070
DRR006522Root Winter glycyrrhizin high producing strain25.527
DRR006523Root Summer glycyrrhizin low producing strain12.025
DRR006524Root Summer glycyrrhizin low producing strain12.044
DRR006525Leaf Summer glycyrrhizin high producing strain99.932
DRR006526Leaf Summer glycyrrhizin high producing strain99.127

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)100.657
SRR2868004Drought Stress(Tissue:root)149.773
SRR2967015Control (Tissue:root)76.553

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave129.217
SRR9715740Leave48.275
SRR9715741Leave58.771
SRR9715739Root13.689
SRR9715742Root36.335
SRR9715743Root32.950

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h274.856
SRR8749028MeJA induced 9h209.902
SRR8749029MeJA induced 9h205.895
SRR8749030Uninduced293.341
SRR8749031Uninduced139.264
SRR8749032Uninduced142.975

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root84.199
SRR8400027Control-Root44.311

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved