Gene detail information of Glyur000959s00024517.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G55080.1 | 2.00E-96 | SET domain-containing protein |
| NR | KHN37307.1 | 0 | Histone-lysine N-methyltransferase setd3 [Glycine soja] |
| trEMBL | tr|I1LFF4|I1LFF4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G43900.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00959 | 93741 | 100735 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SET |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K19199 | SETD3 | EC:2.1.1.43 | Lysine degradation | map00310 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000959s00024517.1 | PF00856.23 | SET | 180 | 226 | 9.30E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.324 |
| SRR1783600 | control | 8.150 |
| SRR1783602 | moderate drought stress | 13.551 |
| SRR1811619 | moderate drought stress | 13.410 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.563 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.829 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 19.933 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 19.491 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.054 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.440 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.711 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.494 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 13.013 |
| SRR2868004 | Drought Stress(Tissue:root) | 17.156 |
| SRR2967015 | Control (Tissue:root) | 21.385 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 8.944 |
| SRR9715740 | Leave | 11.911 |
| SRR9715741 | Leave | 13.320 |
| SRR9715739 | Root | 1.734 |
| SRR9715742 | Root | 2.853 |
| SRR9715743 | Root | 3.509 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 33.588 |
| SRR8749028 | MeJA induced 9h | 31.922 |
| SRR8749029 | MeJA induced 9h | 28.421 |
| SRR8749030 | Uninduced | 12.888 |
| SRR8749031 | Uninduced | 10.513 |
| SRR8749032 | Uninduced | 12.553 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 20.217 |
| SRR8400027 | Control-Root | 16.718 |