Gene detail information of Glyur000960s00023946.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G23820.1 | 0 | Pectin lyase-like superfamily protein |
| NR | KEH33635.1 | 0 | polygalacturonase/glycoside hydrolase family protein [Medicago truncatula] |
| COG | YP_001179193.1 | 6.00E-62 | galacturan 1,4-alpha-galacturonidase [Caldicellulosiruptor saccharolyticus DSM 8903] |
| Swissprot | tr|A7PZL3|PGLR_VITVI | 2.00E-138 | Probable polygalacturonase |
| trEMBL | tr|A0A072V631|A0A072V631_MEDTR | 0 | Polygalacturonase/glycoside hydrolase family protein {ECO:0000313|EMBL:KEH33635.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00960 | 11305 | 15912 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH28 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000960s00023946.1 | PF00295.12 | Glyco_hydro_28 | 153 | 422 | 6.00E-40 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.787 |
| SRR1783600 | control | 5.808 |
| SRR1783602 | moderate drought stress | 3.705 |
| SRR1811619 | moderate drought stress | 3.883 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.393 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.869 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.666 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.744 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.003 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.990 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 40.466 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 43.685 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 10.338 |
| SRR2868004 | Drought Stress(Tissue:root) | 5.269 |
| SRR2967015 | Control (Tissue:root) | 4.437 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 21.788 |
| SRR9715740 | Leave | 27.451 |
| SRR9715741 | Leave | 14.044 |
| SRR9715739 | Root | 7.039 |
| SRR9715742 | Root | 6.824 |
| SRR9715743 | Root | 7.426 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.092 |
| SRR8749028 | MeJA induced 9h | 1.722 |
| SRR8749029 | MeJA induced 9h | 0.690 |
| SRR8749030 | Uninduced | 0.784 |
| SRR8749031 | Uninduced | 0.047 |
| SRR8749032 | Uninduced | 0.523 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.216 |
| SRR8400027 | Control-Root | 9.336 |