Gene detail

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Gene detail information of Glyur000960s00023954.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G43010.2	3.00E-39	phytochrome interacting factor 4
NR	XP_003551947.2	0	PREDICTED: transcription factor PIF4-like isoform X1 [Glycine max]
Swissprot	tr\|Q84LH8\|PIF5_ARATH	9.00E-43	Transcription factor PIF5
trEMBL	tr\|I1N126\|I1N126_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G14530.1}

Sequence

Transcript Sequence

>Glyur000960s00023954.1
GCCATGTTTTTCTCGCTGTTTAGAAGCGCAAAACACCATTTTACCATGGGATTTTCATTTTAGCGCTCTCTCTCTCTCTCTCTCTCTAAGCTGATGTCACTGTCTTTCTTCTTCTTGTTAAAAACTCTTCTTCATGCTTTGTTCTCACACTTCCCTAAGAAATAAACACACACTCAGAGAGAGCTAAAGACAGAACAAACAAGGAGCTTCTGTTTCAAGCTTCTAGTTCTAGCTACACCTTCTACTTCAGCACAAGTCAGAAGAAAGAAAAGAAAAAACTGCCTTGGCCTTAGCTCAGATAATTGGTTTGGTTAACCATGAACAACAGTGTTCCTGATTGGAATTTTGGGAGTGATACCTGTGTCACCAATCAACAGAAGCACATGGGGCTGGACCATGAACTTGTGGAGCTCCTATGGCAAAATGGCCAGGTAGTATTGCACAGCCAAACAAATAGGAAACCACTGGTGAATTCAACCACCTCAACAAGACAGGTTCAGAAAAATCATCTTCAGACAACATTAAGGACTAGTTGTGAGCCATTTGGGAACTCAAGCAACCTGATTCAAGATGATGAGACAGTCTCATGGATCCAATACCCTCTTGAGGATCATCCACTGGAACAAGAATTGTGTTCAAACCTTTTATCTGAACTGCCACATAGTGAAGTTGAGTCTTATAATAAGCATATCAGGCAATTTGAAGAGGGAAAGTTTACCAAATTGGATACTTCTTCTAGTGCTCCCCATGTGNCTGTAAGTTGTTCACAACCACCTAATATGAAACCCTCCTTTGTTCAGGAGTTCCCAGGAATTCCTATTCCTGCTCCAAGATTTCATGTTCCCGATTCGTCTCAGAGAAACAACAACGATTCGGGTGGATCACNCAAGGTCCTAAACTTTTCTCACTTTCAAGCACCCCCCAATGTTAATGCACATTTTAGAGACAAAATTGCTGGTAATAATCTGTCAAAAGGAGAGATTAGAGAGTGCTCAGTGATGACAGTTGGCTCAAGTTACTGTGGTAGCAACCACATCCCCCATGATCCTGTTTTAAGTAGGGCATCAAGCAATGGTGTTTGGACTAATACTACTAATTTATCTGCTGAGCCTGAAGCTGTCAGAGATGATGATGTCCAGAGAACAGTTCCTCAGAATGAGAAAGGGAAATCAGAGATGCTGGAACCAACTGTTACTTCATCTTCTGGTGGCTCAGGCAGTAGTCTTGGAAAAACTTGTTCCCTATCTACAAGAAACCAGGGCCAAAAGAGGAAAGGGATGGANGTTGAAGAATCAGTGGAACAAAGTGAGGACACAGAACTCAAATCAGCTGGGGGAAACAAGTCATCTCAGCGGGCAGGGTCGGCCCGAAGGAACCGTGCTGCTGAAGTGCATAATCTATCAGAAAGGAGACGAAGAGATAGGATTAATGAGAAGATGAGGGCATTACAACAACTCATACCTCACAGTAGTAAGACAGACAAAGCATCAATGTTAGAAGAGGCAATTGAATACTTGAAATCACTTCAGTTACAACTTCAGGTAATGTGGATGGGATCTGGTGGCATGGCACCAATGATGCTTCCAGGAATTCAGCACTATATGTCACAAATGGGTATGGGGATGGCCACACCTTCATTTCCTCATCTTCACAATCCGATGCAATTACCAAGAGTGCCACTTGATCAGTCCATATCAGCATCTCAGATGCCAAATCAGACATTAATGTGCCAAACTCCTACTTTGGGTCCATTTAATTACCAGAATCAGATACAAAATCCAGCTCTTTCGGAGCAATATGCACGTTACATGGGCTATCATCTTATGCAAAATTCCTCTCAGCCAATGAATATGTATAGATATGGTCCCCAAGCAGTACAACATAATCAAACAATGATTCCACCCAGCAATAGCAGTGGACCCATGAGTGGAGCCGCTAATATTGACGGTGCTATGAGTGGCAAAATGGATGCATCTTATGCAACTTATTCTATAGCAATTGCTGGTTCTTCCACCTTTAACTAGATAGCAGTACCCCCAAAACATCCTTAAACAGAGGGCTTGGCTGGTGGAATCAATCCTGAGAAAGCTCCAAGATATACCCTCAAAGCTGTGTAGTTTGGTGGCCATGCAATTTGTATCTAATTCNCGAGTTTGTTGTCTAACTTTGAGAAATTGTAGTAGACAGGTCCTTCACTATGGGCCAGTTTTGTTCTCAGCTCCTATGTCCCATCAGGTATATATATAGCATTATTCACTGTATTGTAACATGATAAGCTAATTATTTTTGCTGAAAGAAGCAATGGTTTTGTCTGAACTTCTCACGAGAACAATGTATTTTGCTCAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00960	44527	50274	-

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH
EAR motif-containing Proteins	bHLH

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000960s00023954.1	PF00010.21	HLH	358	404	1.10E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.309
SRR1783600	control	0.296
SRR1783602	moderate drought stress	0.528
SRR1811619	moderate drought stress	0.508

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.553
DRR006520	Root Summer glycyrrhizin high producing strain	0.520
DRR006521	Root Winter glycyrrhizin high producing strain	2.078
DRR006522	Root Winter glycyrrhizin high producing strain	2.143
DRR006523	Root Summer glycyrrhizin low producing strain	0.719
DRR006524	Root Summer glycyrrhizin low producing strain	0.666
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.902
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.644

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.620
SRR2868004	Drought Stress(Tissue:root)	0.896
SRR2967015	Control (Tissue:root)	0.868

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	38.293
SRR9715740	Leave	51.629
SRR9715741	Leave	40.358
SRR9715739	Root	0.074
SRR9715742	Root	0.635
SRR9715743	Root	0.656

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.199
SRR8749028	MeJA induced 9h	0.926
SRR8749029	MeJA induced 9h	0.845
SRR8749030	Uninduced	0.767
SRR8749031	Uninduced	0.228
SRR8749032	Uninduced	0.409

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	1.082
SRR8400027	Control-Root	0.797