Gene detail

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Gene detail information of Glyur000960s00023960.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G08560.2	0	transducin family protein / WD-40 repeat family protein
NR	XP_006602270.1	0	PREDICTED: WD repeat-containing protein 26-like isoform X1 [Glycine max]
COG	YP_007119781.1	4.00E-32	WD40 repeat-containing protein [Microcoleus sp. PCC 7113]
Swissprot	tr\|A8IZG4\|CIAO1_CHLRE	3.00E-22	Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog {ECO:0000255\|HAMAP-Rule:MF_03037}
trEMBL	tr\|I1N122\|I1N122_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G14400.3}

Sequence

Transcript Sequence

>Glyur000960s00023960.1
AGAAAAGGAAAGAAAAAGAAAAAACTGAAAAATAAAAAGAGAAATTCAGTAGAATAATTGATGAAAATTTTCTCTCTATATATAAACACATATCCACACCATCCAATCCCTTTCTCCTGCTTCGGTAACTGCAAAGAGAAGGAAAGAGAGAAAACGGTGTGAGGCGCTAAGAAGAGAAGAAGAAAGAAGAAGCAAGCACAAGGAGGAATCGGCGGTGCTCCACCGGCGATCGCTCATCGGGCTCCGGCGAACTTCAGATCGCTGCTCCTGCTTCTCCGAAATTCGTTACTTGCAATTTTTCGGAGGCATTTGGTTGTTGGTTGTTAACTATTGCTGTACTGCTTTTTTGCTCACAGCTGGAAAATTATCATATATGGGCTGAGGTGCACTTTTCATGGGAGGTGTGGAAGATGAAGAACCAGCTTTAAAACGCATGAAATTATCCTCTAAAGGATTAGTTAGTCTCTCTAACGGTTCATCTTCTGTGGAGCCCGTTGTAGGCTCATCAAGTGACTTGATGGCTCGGCCCCTGTCATCTGAAGGGGACGGCGAAGTTATTGGTTCAAAAGGGATCATAAAAAGAGAGGAATTTGTTAGGATAATCACAAAGGCATTGTATTCTCTTGGTTACAAAAAGACCGGGGCACACCTAGAGGAGGAGTCCGGCATACCTTTGCATTCTTCTGTGGTAAATCTGTTTATGCAGCAGATACTTGATGGCGATTGGGACGNAAGCGTAGCCACATTGAATAAAATTGGTCTAGAAGATGAAAGCGTTGTCAGGGCAGCCTCATTTCTAATATTGGAGCAGAAATTCTTTGAGCTTCTTGATGGCGAAAAGGACATGGATGCATTGAAGACATTGAGGACTGAGATTGCACCACTCTGTGCTGATAGTAGTAGAATCCGTGAACTTTCTTCCTGCTTGGTGTCTCCGTGTGGCCAAGATGGTTCTTCTGGGCGGGATTTTGTAAGGGTGAGGACTCGGTCAAAACTGTTGGAGGAATTGCAGAAACTGCTTCCCCCGAAATTAATGATACCTGAAAAGAGATTGGAACATCTAGTTGAACAAGCCCTTATCTTGCAACGAGAGGCTTGCTTGTTTCACAACTCATTGGATAAGGAGATGTCATTGTATTCAGATCATCACTGTGGAAAAACTCAGATACCTACTAGAACATTACAGATATTAGAAGCACATGATGGTGAAGTATGGTTTGTACAATTTTCACATAATGGGAAATATTTAGCTTCAGCATCAAANGATCGAACTGCAATCATTTGGGAGGTTGACATTAATGGTGGACTGTCTATCAAGCATAAACTATGTGGTCACCAGAAACCTGTTTCTTNTGTTTCCTGGAGTCCTAATGACCAAGAGCTCCTCACATGTGGAGTGGAGGAGGCTGTTAGGCGTTGGGATGTCTCTACTGGCAAGTGCCTGCAAGTTTATGAAAAAAATGGCCCTGGCCTGATCTCCTGTGCATGGTTTCCGAGTGGAAAATATATACTTTCTGGCCTCAATGACAAGAGCATTTGCATGTGGGAATTAGATGGGAAAGAAGTGGAGTCTTGGAAAGGACAAAAAACCCTTAAGATTTCTGATTTGGAAGTAACGGGTGACGGGGAACATATTCTCAGTATTTGTAAAGACAATGCAATACTGTTCTTAAACAAAGAAACGAAGGATGAGAGATTTATTGAAGAGGACCAGACTATAACTTCATTCTCTTTGTCAAAGGATAGCAGATTCTTGCTGGTTAATCTTTTGAACCAAGAGATACATCTTTGGAATATAGAAGGTGATCCTAAGCTTGTCAGCAAGTATAAAAGTCATAAGCGCTCCCGGTTTGTTATTAGATCTTGCTTTGGTGGGCTTAAGCAAGCTTTTATTGCTAGTGGAAGTGAGGATTCACAGGTTTACATATGGCACAGAAGCTCAGGGAATCTAATAGATGCATTGCCTGGTCATTCTGGAGCAGTTAACTGTGTGAGCTGGAACCCAGCTAACCCCCACATGTTGGCCTCAGCCAGTGATGACCGGACAGTCCGGATATGGGGCTTAAAGTGTCTGAATGTAAAGTACCAAAATGCATACAGCAATGGCAACCATCACTGCAATGGCGGGGAACTTAGATGAAGGCAAAACTATTCCCATTTCATTTCTTTTTCATCATTGCAATTGTGTAAATACCTTTACTCTGTCACCACAAGTAGACGACATTCA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00960	74875	79721	+

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000960s00023960.1	PF00400.27	WD40	263	298	9.40E-09
Glyur000960s00023960.1	PF00400.27	WD40	307	343	0.00017
Glyur000960s00023960.1	PF00400.27	WD40	347	385	3.90E-05
Glyur000960s00023960.1	PF00400.27	WD40	520	555	4.00E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	27.624
SRR1783600	control	27.609
SRR1783602	moderate drought stress	29.286
SRR1811619	moderate drought stress	29.142

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	34.477
DRR006520	Root Summer glycyrrhizin high producing strain	34.230
DRR006521	Root Winter glycyrrhizin high producing strain	46.277
DRR006522	Root Winter glycyrrhizin high producing strain	45.236
DRR006523	Root Summer glycyrrhizin low producing strain	40.933
DRR006524	Root Summer glycyrrhizin low producing strain	41.242
DRR006525	Leaf Summer glycyrrhizin high producing strain	21.765
DRR006526	Leaf Summer glycyrrhizin high producing strain	21.629

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	52.127
SRR2868004	Drought Stress(Tissue:root)	62.563
SRR2967015	Control (Tissue:root)	60.048

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	24.735
SRR9715740	Leave	26.519
SRR9715741	Leave	29.276
SRR9715739	Root	7.029
SRR9715742	Root	27.840
SRR9715743	Root	24.779

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	43.874
SRR8749028	MeJA induced 9h	60.920
SRR8749029	MeJA induced 9h	40.892
SRR8749030	Uninduced	32.882
SRR8749031	Uninduced	36.943
SRR8749032	Uninduced	38.845

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	47.188
SRR8400027	Control-Root	46.766