Gene detail information of Glyur000961s00028329.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G70060.10SIN3-like 4
NRXP_006573075.10PREDICTED: paired amphipathic helix protein Sin3-like 4-like isoform X1 [Glycine max]
Swissprottr|O04539|SNL4_ARATH0Paired amphipathic helix protein Sin3-like 4
trEMBLtr|K7K633|K7K633_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G03060.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold009612875640531+


Gene family

Gene familysubfamily
Transcription Factors FamilyOrphans


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000961s00028329.1PF02671.16PAH601061.20E-16
Glyur000961s00028329.1PF02671.16PAH1461912.30E-21
Glyur000961s00028329.1PF02671.16PAH3574029.00E-20
Glyur000961s00028329.1PF08295.7Sin3_corepress4995912.10E-41


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control12.445
SRR1783600control12.511
SRR1783602moderate drought stress13.119
SRR1811619moderate drought stress12.878

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain17.267
DRR006520Root Summer glycyrrhizin high producing strain16.766
DRR006521Root Winter glycyrrhizin high producing strain29.122
DRR006522Root Winter glycyrrhizin high producing strain28.659
DRR006523Root Summer glycyrrhizin low producing strain20.543
DRR006524Root Summer glycyrrhizin low producing strain20.424
DRR006525Leaf Summer glycyrrhizin high producing strain12.513
DRR006526Leaf Summer glycyrrhizin high producing strain12.502

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)34.544
SRR2868004Drought Stress(Tissue:root)35.673
SRR2967015Control (Tissue:root)37.234

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave16.405
SRR9715740Leave17.842
SRR9715741Leave21.384
SRR9715739Root2.162
SRR9715742Root19.260
SRR9715743Root16.851

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h29.799
SRR8749028MeJA induced 9h37.950
SRR8749029MeJA induced 9h22.970
SRR8749030Uninduced24.087
SRR8749031Uninduced23.268
SRR8749032Uninduced13.874

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root34.688
SRR8400027Control-Root35.704

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved