Gene detail information of Glyur000961s00028333.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G70090.2 | 2.00E-146 | glucosyl transferase family 8 |
| NR | XP_003613432.1 | 0 | Glycosyltransferase CAZy family GT8 [Medicago truncatula] |
| COG | YP_007062961.1 | 5.00E-18 | LPS:glycosyltransferase [Synechococcus sp. PCC 6312] |
| Swissprot | tr|O04536|GATL9_ARATH | 0 | Probable galacturonosyltransferase-like 9 |
| trEMBL | tr|G7K5M7|G7K5M7_MEDTR | 0 | CAZy family GT8 glycosyltransferase {ECO:0000313|EMBL:AES96390.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00961 | 76798 | 78147 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT8 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000961s00028333.1 | PF01501.15 | Glyco_transf_8 | 73 | 325 | 6.00E-63 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.471 |
| SRR1783600 | control | 13.594 |
| SRR1783602 | moderate drought stress | 9.174 |
| SRR1811619 | moderate drought stress | 9.039 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 38.917 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 37.456 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.666 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.659 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 43.887 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 43.374 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 14.775 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.859 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 43.301 |
| SRR2868004 | Drought Stress(Tissue:root) | 32.755 |
| SRR2967015 | Control (Tissue:root) | 35.816 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 16.152 |
| SRR9715740 | Leave | 8.271 |
| SRR9715741 | Leave | 12.541 |
| SRR9715739 | Root | 56.821 |
| SRR9715742 | Root | 84.811 |
| SRR9715743 | Root | 75.299 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 27.801 |
| SRR8749028 | MeJA induced 9h | 26.097 |
| SRR8749029 | MeJA induced 9h | 32.198 |
| SRR8749030 | Uninduced | 9.033 |
| SRR8749031 | Uninduced | 6.128 |
| SRR8749032 | Uninduced | 12.066 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 24.733 |
| SRR8400027 | Control-Root | 32.759 |