Gene detail information of Glyur000962s00030556.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G25440.13.00E-117zinc finger WD40 repeat protein 1
NRXP_004513686.10PREDICTED: zinc finger CCCH domain-containing protein 48-like [Cicer arietinum]
COGYP_007317914.13.00E-18WD40 repeat-containing protein [Cylindrospermum stagnale PCC 7417]
Swissprottr|Q9FNZ2|C3H48_ARATH1.00E-155Zinc finger CCCH domain-containing protein 48
trEMBLtr|A0A072U9U5|A0A072U9U5_MEDTR0Zinc finger CCCH domain protein {ECO:0000313|EMBL:KEH26579.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold009621307919870-


Gene family

Gene familysubfamily
Transcription Factors FamilyC3H
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0046872  metal ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000962s00030556.1PF00642.19zf-CCCH1091292.00E-06
Glyur000962s00030556.1PF00400.27WD401381741.10E-05
Glyur000962s00030556.1PF00400.27WD402602958.90E-07
Glyur000962s00030556.1PF00400.27WD403003337.60E-06


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control32.248
SRR1783600control32.255
SRR1783602moderate drought stress29.841
SRR1811619moderate drought stress29.625

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain37.705
DRR006520Root Summer glycyrrhizin high producing strain37.614
DRR006521Root Winter glycyrrhizin high producing strain31.106
DRR006522Root Winter glycyrrhizin high producing strain30.240
DRR006523Root Summer glycyrrhizin low producing strain43.817
DRR006524Root Summer glycyrrhizin low producing strain43.886
DRR006525Leaf Summer glycyrrhizin high producing strain17.830
DRR006526Leaf Summer glycyrrhizin high producing strain17.895

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)44.809
SRR2868004Drought Stress(Tissue:root)40.578
SRR2967015Control (Tissue:root)40.346

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave28.152
SRR9715740Leave36.141
SRR9715741Leave40.586
SRR9715739Root19.716
SRR9715742Root34.816
SRR9715743Root29.839

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h42.175
SRR8749028MeJA induced 9h46.236
SRR8749029MeJA induced 9h37.843
SRR8749030Uninduced37.325
SRR8749031Uninduced35.708
SRR8749032Uninduced50.411

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root41.475
SRR8400027Control-Root36.803

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved