Gene detail information of Glyur000963s00023038.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G20540.1 | 9.00E-161 | Transducin/WD40 repeat-like superfamily protein |
| NR | XP_003523140.1 | 0 | PREDICTED: WD repeat-containing protein DWA2 [Glycine max] |
| COG | YP_001514565.1 | 4.00E-07 | WD repeat-containing protein [Acaryochloris marina MBIC11017] |
| Swissprot | tr|Q6NPN9|DWA2_ARATH | 0 | WD repeat-containing protein DWA2 |
| trEMBL | tr|I1JSW6|I1JSW6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G02030.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00963 | 22501 | 27587 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000963s00023038.1 | PF00400.27 | WD40 | 243 | 280 | 2.80E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 20.078 |
| SRR1783600 | control | 20.153 |
| SRR1783602 | moderate drought stress | 17.078 |
| SRR1811619 | moderate drought stress | 16.905 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 21.877 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 21.980 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 13.772 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.624 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 19.489 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 20.018 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 17.942 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 18.208 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 49.159 |
| SRR2868004 | Drought Stress(Tissue:root) | 38.649 |
| SRR2967015 | Control (Tissue:root) | 41.042 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 15.959 |
| SRR9715740 | Leave | 20.253 |
| SRR9715741 | Leave | 20.322 |
| SRR9715739 | Root | 10.339 |
| SRR9715742 | Root | 12.560 |
| SRR9715743 | Root | 11.917 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 56.991 |
| SRR8749028 | MeJA induced 9h | 39.303 |
| SRR8749029 | MeJA induced 9h | 38.990 |
| SRR8749030 | Uninduced | 17.734 |
| SRR8749031 | Uninduced | 9.386 |
| SRR8749032 | Uninduced | 16.494 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 47.456 |
| SRR8400027 | Control-Root | 47.168 |