Gene detail information of Glyur000963s00023040.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G76270.1 | 0 | O-fucosyltransferase family protein |
| NR | KEH36297.1 | 0 | GDP-fucose O-fucosyltransferase-like protein [Medicago truncatula] |
| Swissprot | tr|Q8W486|Y1491_ARATH | 2.00E-85 | Uncharacterized protein At1g04910 |
| trEMBL | tr|A0A072V388|A0A072V388_MEDTR | 0 | GDP-fucose O-fucosyltransferase-like protein {ECO:0000313|EMBL:KEH36297.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00963 | 38260 | 45502 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000963s00023040.1 | PF10250.4 | O-FucT | 119 | 433 | 1.20E-91 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.977 |
| SRR1783600 | control | 8.169 |
| SRR1783602 | moderate drought stress | 9.672 |
| SRR1811619 | moderate drought stress | 9.780 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 16.186 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.993 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 24.485 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 23.744 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.253 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.513 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.098 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.027 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 20.563 |
| SRR2868004 | Drought Stress(Tissue:root) | 18.256 |
| SRR2967015 | Control (Tissue:root) | 18.362 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 7.942 |
| SRR9715740 | Leave | 7.525 |
| SRR9715741 | Leave | 8.592 |
| SRR9715739 | Root | 1.139 |
| SRR9715742 | Root | 6.547 |
| SRR9715743 | Root | 6.169 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.570 |
| SRR8749028 | MeJA induced 9h | 11.866 |
| SRR8749029 | MeJA induced 9h | 9.232 |
| SRR8749030 | Uninduced | 15.347 |
| SRR8749031 | Uninduced | 13.267 |
| SRR8749032 | Uninduced | 8.475 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 15.496 |
| SRR8400027 | Control-Root | 17.587 |