Gene detail information of Glyur000963s00023046.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G03650.10starch branching enzyme 2.2
NRAHW50662.10starch branching protein I [Lens culinaris]
COGYP_677957.10glycogen branching protein [Cytophaga hutchinsonii ATCC 33406]
Swissprottr|Q41059|GLGB2_PEA01,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic (Precursor; Fragment)
trEMBLtr|X5CRZ1|X5CRZ1_LENCU0Starch branching protein I {ECO:0000313|EMBL:AHW50662.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold009637760786066-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyCBM48,GH13


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00700GBE1, glgB EC:2.4.1.18 Starch and sucrose metabolism map00500


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process

GO:0005978  glycogen biosynthetic process


molecular_function

GO:0003824  catalytic activity

GO:0003844  1,4-alpha-glucan branching enzyme activity

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0043169  cation binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000963s00023046.1PF02922.13CBM_481312145.60E-18
Glyur000963s00023046.1PF00128.19Alpha-amylase2894222.50E-12
Glyur000963s00023046.1PF02806.13Alpha-amylase_C6447432.10E-22


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1234.957
SRR1783600control1232.927
SRR1783602moderate drought stress1632.641
SRR1811619moderate drought stress1628.084

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1018.628
DRR006520Root Summer glycyrrhizin high producing strain1003.645
DRR006521Root Winter glycyrrhizin high producing strain131.434
DRR006522Root Winter glycyrrhizin high producing strain127.470
DRR006523Root Summer glycyrrhizin low producing strain710.587
DRR006524Root Summer glycyrrhizin low producing strain708.647
DRR006525Leaf Summer glycyrrhizin high producing strain184.665
DRR006526Leaf Summer glycyrrhizin high producing strain183.796

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)150.271
SRR2868004Drought Stress(Tissue:root)94.451
SRR2967015Control (Tissue:root)76.962

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave44.341
SRR9715740Leave67.980
SRR9715741Leave44.566
SRR9715739Root124.673
SRR9715742Root681.757
SRR9715743Root601.453

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h27.190
SRR8749028MeJA induced 9h22.074
SRR8749029MeJA induced 9h14.447
SRR8749030Uninduced5.850
SRR8749031Uninduced2.839
SRR8749032Uninduced5.269

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root1342.993
SRR8400027Control-Root1458.510

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved