Gene detail information of Glyur000964s00027947.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRATCG00670.11.00E-16plastid-encoded CLP P
NRYP_009027297.12.61E-27clp protease proteolytic subunit (chloroplast) [Glycyrrhiza glabra]
COGYP_003262290.15.00E-10ATP-dependent Clp protease proteolytic subunit ClpP [Halothiobacillus neapolitanus c2]
Swissprottr|A6MMW9|CLPP_ILLOL2.00E-23ATP-dependent Clp protease proteolytic subunit {ECO:0000255|HAMAP-Rule:MF_00444}
trEMBLtr|A0A023I6V9|A0A023I6V9_GLYGL1.00E-27ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold009644164743220+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01358clpP, CLPP EC:3.4.21.92 Cell cycle - Caulobacter map04112
Longevity regulating pathway - wormmap04212


Gene Ontology

biological_process

GO:0006508  proteolysis


molecular_function

GO:0004252  serine-type endopeptidase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000964s00027947.1PF00574.18CLP_protease1624.50E-12


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control9.281
SRR1783600control9.986
SRR1783602moderate drought stress11.338
SRR1811619moderate drought stress9.853

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.471
DRR006520Root Summer glycyrrhizin high producing strain1.913
DRR006521Root Winter glycyrrhizin high producing strain1.116
DRR006522Root Winter glycyrrhizin high producing strain0.800
DRR006523Root Summer glycyrrhizin low producing strain1.976
DRR006524Root Summer glycyrrhizin low producing strain2.316
DRR006525Leaf Summer glycyrrhizin high producing strain4.896
DRR006526Leaf Summer glycyrrhizin high producing strain4.423

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.201
SRR2868004Drought Stress(Tissue:root)0.172
SRR2967015Control (Tissue:root)0.177

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.655
SRR9715740Leave1.033
SRR9715741Leave0.706
SRR9715739Root3.708
SRR9715742Root1.477
SRR9715743Root1.508

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.646
SRR8749028MeJA induced 9h0.229
SRR8749029MeJA induced 9h0.216
SRR8749030Uninduced0.199
SRR8749031Uninduced0.164
SRR8749032Uninduced0.229

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.095
SRR8400027Control-Root0.069

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved