Gene detail information of Glyur000964s00027950.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G48250.1 | 1.00E-88 | B-box type zinc finger protein with CCT domain |
| NR | XP_003542186.1 | 0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9SSE5|COL9_ARATH | 5.00E-146 | Zinc finger protein CONSTANS-LIKE 9 |
| trEMBL | tr|K7LYE4|K7LYE4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G11592.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00964 | 50531 | 56868 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2C2-CO-like |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000964s00027950.1 | PF00643.19 | zf-B_box | 46 | 90 | 1.30E-05 |
| Glyur000964s00027950.1 | PF06203.9 | CCT | 357 | 400 | 2.60E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.706 |
| SRR1783600 | control | 1.653 |
| SRR1783602 | moderate drought stress | 1.239 |
| SRR1811619 | moderate drought stress | 1.219 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.541 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.493 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.814 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.752 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.046 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.332 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.850 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.928 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.743 |
| SRR2868004 | Drought Stress(Tissue:root) | 6.679 |
| SRR2967015 | Control (Tissue:root) | 11.953 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 6.819 |
| SRR9715740 | Leave | 3.991 |
| SRR9715741 | Leave | 6.566 |
| SRR9715739 | Root | 2.002 |
| SRR9715742 | Root | 1.974 |
| SRR9715743 | Root | 1.724 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.116 |
| SRR8749028 | MeJA induced 9h | 3.397 |
| SRR8749029 | MeJA induced 9h | 5.627 |
| SRR8749030 | Uninduced | 3.216 |
| SRR8749031 | Uninduced | 2.080 |
| SRR8749032 | Uninduced | 2.315 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 18.211 |
| SRR8400027 | Control-Root | 20.014 |