Gene detail

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Gene detail information of Glyur000966s00025843.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G08500.1	2.00E-59	myb domain protein 83
NR	XP_006590966.1	2.85E-162	PREDICTED: transcription factor MYB46-like [Glycine max]
Swissprot	tr\|Q9LXV2\|MYB46_ARATH	9.00E-71	Transcription factor MYB46
trEMBL	tr\|K7LPK7\|K7LPK7_SOYBN	1.00E-162	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G14200.2}

Sequence

Transcript Sequence

>Glyur000966s00025843.1
ATGAGGAAGCCTGAGACATCTGGTGGAAAAAACAACAACAACAACAACAACTCGTCCAACAATATTAAGCTTAGGAAAGGGTTGTGGTCACCAGAGGAAGATGACAAGCTCATGAACTACATGCTGAACAATGGACAAGGTTGTTGGAGCGATGTGGCCAGAAATGCTGGCTTGCAAAGGTGTGGCAAAAGTTGTCGCCTTCGATGGATCAATTATTTGCGCCCTGACCTTAAACGAGGCGCATTCTCCCCACAAGAAGAGGAACTCATCATCCATTTCCATTCCCTTCTTGGAAACAGATGGTCTCAAATAGCAGCACGTTTACCAGGGAGAACTGACAATGAAATAAAGAACTTTTGGAATTCAACAATAAAGAAAAGACTCAAGAACATGACCTCCACAACCTCACCAAACGCAAGCGAGTCCTCAATATATGAGCCTAATGATAACAAAGACCTTAACATTATGGGAGGGTTCACTTCATCTACACAAGATCAACATGCTGATATGCCTATGTTCAGTTCATCTCCATCACCAACGCCATCACCATCAATGCAAGCCACAGTTCTCAATACCNTAATTGACAGGTTGCCTATGATAGAAAATGGAATAAACATGCCAGCAGCTACAGCTGGTGGTGGATTCTTCAATAGTACTGCAGGGGCATGCTTTTCACAGAGTGGAGTTGACAGCAGCATCAAAGGTTTTTATTTGGGAAATGGAGTGTTTGGGAGTATTGAGGCAGAAGGGGACATGTATATTCCTCCTCTAGAGAGTGTAATTAGCACTACTTATAACCATAGCCTAAAAATGGAGAGTGCATGCAATGGATCAGACACTAACAATAGTAATTACTTTGATGACATAAACAGCAATAATATCATTAACAATAGCTNCAGTATTAGCAACAATAAGAGAGGTGAAAATAGAGCTGGACTTGGGGTGGAGAATTTGTTTCAAGAAGAGTTAAGTACTACATTGGGAGAGTGGGACTTGGAGGACTTGATGAAAGATGTTTCATCCTTTCCCTTTCTTGATTTTTCAAGCTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00966	33808	36150	-

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000966s00025843.1	PF00249.26	Myb_DNA-binding	26	73	5.60E-12
Glyur000966s00025843.1	PF00249.26	Myb_DNA-binding	79	122	1.50E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.108
SRR1783600	control	0.105
SRR1783602	moderate drought stress	0.714
SRR1811619	moderate drought stress	0.640

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.976
DRR006520	Root Summer glycyrrhizin high producing strain	2.007
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	1.451
DRR006524	Root Summer glycyrrhizin low producing strain	1.321
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.389
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.378

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	2.733
SRR2868004	Drought Stress(Tissue:root)	1.851
SRR2967015	Control (Tissue:root)	1.988

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.577
SRR9715740	Leave	1.566
SRR9715741	Leave	0.703
SRR9715739	Root	0.000
SRR9715742	Root	0.469
SRR9715743	Root	0.179

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.588
SRR8400027	Control-Root	0.954